Professor Miles Davenport

Aggarwal A; Stella AO; Walker G; Akerman A; Esneau C; Milogiannakis V; Burnett DL; McAllery S; Silva MR; Lu Y; Foster CSP; Brilot F; Pillay A; Van Hal S; Mathivanan V; Fichter C; Kindinger A; Hoppe AC; Munier ML; Amatayakul-Chantler S; Roth N; Coppola G; Symonds GP; Schofield P; Jackson J; Lenthall H; Henry JY; Mazigi O; Jäck HM; Davenport MP; Darley DR; Matthews GV; Khoury DS; Cromer D; Goodnow CC; Christ D; Robosa R; Starck DJ; Bartlett NW; Rawlinson WD; Kelleher AD; Turville SG, 2022, 'Platform for isolation and characterization of SARS-CoV-2 variants enables rapid characterization of Omicron in Australia', Nature Microbiology, vol. 7, pp. 896 - 908, http://dx.doi.org/10.1038/s41564-022-01135-7

Radohery GFR; Gower J; Barber BE; Kansagra K; Möhrle JJ; Davenport MP; McCarthy JS; Khoury DS; Rebelo M, 2022, 'Effect of novel antimalarial ZY-19489 on Plasmodium falciparum viability in a volunteer infection study', The Lancet Infectious Diseases, vol. 22, pp. 760 - 761, http://dx.doi.org/10.1016/S1473-3099(22)00294-8

Goel RR; Painter MM; Lundgreen KA; Apostolidis SA; Baxter AE; Giles JR; Mathew D; Pattekar A; Reynaldi A; Khoury DS; Gouma S; Hicks P; Dysinger S; Hicks A; Sharma H; Herring S; Korte S; KC W; Oldridge DA; Erickson RI; Weirick ME; McAllister CM; Awofolaju M; Tanenbaum N; Dougherty J; Long S; D'Andrea K; Hamilton JT; McLaughlin M; Williams JC; Adamski S; Kuthuru O; Drapeau EM; Davenport MP; Hensley SE; Bates P; Greenplate AR; Wherry EJ, 2022, 'Efficient recall of Omicron-reactive B cell memory after a third dose of SARS-CoV-2 mRNA vaccine', Cell, vol. 185, pp. 1875 - 1887.e8, http://dx.doi.org/10.1016/j.cell.2022.04.009

Stern J; Solomon A; Dantanarayana A; Pascoe R; Reynaldi A; Davenport MP; Milush J; Deeks SG; Hartogensis W; Hecht FM; Cockerham L; Roche M; Lewin SR, 2022, 'Cell-Associated Human Immunodeficiency Virus (HIV) Ribonucleic Acid Has a Circadian Cycle in Males With HIV on Antiretroviral Therapy', Journal of Infectious Diseases, vol. 225, pp. 1721 - 1730, http://dx.doi.org/10.1093/infdis/jiab533

Wragg KM; Lee WS; Koutsakos M; Tan HX; Amarasena T; Reynaldi A; Gare G; Konstandopoulos P; Field KR; Esterbauer R; Kent HE; Davenport MP; Wheatley AK; Kent SJ; Juno JA, 2022, 'Establishment and recall of SARS-CoV-2 spike epitope-specific CD4⁺ T cell memory', Nature Immunology, vol. 23, pp. 768 - 780, http://dx.doi.org/10.1038/s41590-022-01175-5

Cele S; Jackson L; Khoury DS; Khan K; Moyo-Gwete T; Tegally H; San JE; Cromer D; Scheepers C; Amoako DG; Karim F; Bernstein M; Lustig G; Archary D; Smith M; Ganga Y; Jule Z; Reedoy K; Hwa SH; Giandhari J; Blackburn JM; Gosnell BI; Abdool Karim SS; Hanekom W; Davies MA; Hsiao M; Martin D; Mlisana K; Wibmer CK; Williamson C; York D; Harrichandparsad R; Herbst K; Jeena P; Khoza T; Kløverpris H; Leslie A; Madansein R; Magula N; Manickchund N; Marakalala M; Mazibuko M; Moshabela M; Mthabela N; Naidoo K; Ndhlovu Z; Ndung’u T; Ngcobo N; Nyamande K; Patel V; Smit T; Steyn A; Wong E; von Gottberg A; Bhiman JN; Lessells RJ; Moosa MYS; Davenport MP; de Oliveira T; Moore PL; Sigal A, 2022, 'Omicron extensively but incompletely escapes Pfizer BNT162b2 neutralization', Nature, vol. 602, pp. 654 - 656, http://dx.doi.org/10.1038/s41586-021-04387-1

Goel RR; Painter MM; Lundgreen KA; Apostolidis SA; Baxter AE; Giles JR; Mathew D; Pattekar A; Reynaldi A; Khoury DS; Gouma S; Hicks P; Dysinger S; Hicks A; Sharma H; Herring S; Korte S; Kc W; Oldridge DA; Erickson RI; Weirick ME; McAllister CM; Awofolaju M; Tanenbaum N; Dougherty J; Long S; D'Andrea K; Hamilton JT; McLaughlin M; Williams JC; Adamski S; Kuthuru O; Drapeau EM; Davenport MP; Hensley SE; Bates P; Greenplate AR; Wherry EJ, 2022, 'Efficient recall of Omicron-reactive B cell memory after a third dose of SARS-CoV-2 mRNA vaccine.', bioRxiv, http://dx.doi.org/10.1101/2022.02.20.481163

Cromer D; Steain M; Reynaldi A; Schlub TE; Wheatley AK; Juno JA; Kent SJ; Triccas JA; Khoury DS; Davenport MP, 2022, 'Neutralising antibody titres as predictors of protection against SARS-CoV-2 variants and the impact of boosting: a meta-analysis', The Lancet Microbe, vol. 3, pp. e52 - e61, http://dx.doi.org/10.1016/S2666-5247(21)00267-6

Tan HX; Davenport MP; Kent SJ; Wheatley AK, 2022, 'Nice and slow make the germinal centers go: measured and escalating antigen delivery enhance durability and quality of humoral immune responses against HIV-1', Immunology and Cell Biology, http://dx.doi.org/10.1111/imcb.12596

Goel RR; Painter MM; Apostolidis SA; Mathew D; Meng W; Rosenfeld AM; Lundgreen KA; Reynaldi A; Khoury DS; Pattekar A; Gouma S; Kuri-Cervantes L; Hicks P; Dysinger S; Hicks A; Sharma H; Herring S; Korte S; Baxter AE; Oldridge DA; Giles JR; Weirick ME; McAllister CM; Awofolaju M; Tanenbaum N; Drapeau EM; Dougherty J; Long S; D’Andrea K; Hamilton JT; McLaughlin M; Williams JC; Adamski S; Kuthuru O; Frank I; Betts MR; Vella LA; Grifoni A; Weiskopf D; Sette A; Hensley SE; Davenport MP; Bates P; Luning Prak ET; Greenplate AR; John Wherry E, 2021, 'mRNA vaccines induce durable immune memory to SARS-CoV-2 and variants of concern', Science, vol. 374, pp. eabm0829, http://dx.doi.org/10.1126/science.abm0829

Moriarty RV; Fesser N; Sutton MS; Venturi V; Davenport MP; Schlub T; O’Connor SL, 2021, 'Validation of multiplex PCR sequencing assay of SIV', Virology Journal, vol. 18, http://dx.doi.org/10.1186/s12985-020-01473-0

Wheatley AK; Juno JA; Wang JJ; Selva KJ; Reynaldi A; Tan HX; Lee WS; Wragg KM; Kelly HG; Esterbauer R; Davis SK; Kent HE; Mordant FL; Schlub TE; Gordon DL; Khoury DS; Subbarao K; Cromer D; Gordon TP; Chung AW; Davenport MP; Kent SJ, 2021, 'Evolution of immune responses to SARS-CoV-2 in mild-moderate COVID-19', Nature Communications, vol. 12, pp. 1162, http://dx.doi.org/10.1038/s41467-021-21444-5

Moriarty RV; Golfinos AE; Gellerup DD; Schweigert H; Mathiaparanam J; Balgeman AJ; Weiler AM; Friedrich TC; Keele BF; Davenport MP; Venturi V; OConnor SL, 2021, 'The mucosal barrier and anti-viral immune responses can eliminate portions of the viral population during transmission and early viral growth', PLoS ONE, vol. 16, http://dx.doi.org/10.1371/journal.pone.0260010

Lee WS; Reynaldi A; Amarasena T; Davenport MP; Parsons MS; Kent SJ, 2021, 'Anti-Drug Antibodies in Pigtailed Macaques Receiving HIV Broadly Neutralising Antibody PGT121', Frontiers in Immunology, vol. 12, http://dx.doi.org/10.3389/fimmu.2021.749891

Wheatley AK; Fox A; Tan HX; Juno JA; Davenport MP; Subbarao K; Kent SJ, 2021, 'Immune imprinting and SARS-CoV-2 vaccine design', Trends in Immunology, vol. 42, pp. 956 - 959, http://dx.doi.org/10.1016/j.it.2021.09.001

Juno J; Wragg K; Lee WS; Amarasena T; Reynaldi A; Koutsakos M; Konstandopoulos P; Field K; Esterbauer R; Tan H-X; Kent H; Davenport M; Wheatley A; Kent S, 2021, 'Tracking the kinetics and phenotype of spike epitope-specific CD4 T cell immunity in the context of SARS-CoV-2 infection and vaccination', , http://dx.doi.org/10.21203/rs.3.rs-957030/v1

Wheatley AK; Pymm P; Esterbauer R; Dietrich MH; Lee WS; Drew D; Kelly HG; Chan LJ; Mordant FL; Black KA; Adair A; Tan HX; Juno JA; Wragg KM; Amarasena T; Lopez E; Selva KJ; Haycroft ER; Cooney JP; Venugopal H; Tan LL; O Neill MT; Allison CC; Cromer D; Davenport MP; Bowen RA; Chung AW; Pellegrini M; Liddament MT; Glukhova A; Subbarao K; Kent SJ; Tham WH, 2021, 'Landscape of human antibody recognition of the SARS-CoV-2 receptor binding domain', Cell Reports, vol. 37, pp. 109822, http://dx.doi.org/10.1016/j.celrep.2021.109822

Khoury DS; Cromer D; Reynaldi A; Schlub TE; Wheatley AK; Juno JA; Subbarao K; Kent SJ; Triccas JA; Davenport MP, 2021, 'Neutralizing antibody levels are highly predictive of immune protection from symptomatic SARS-CoV-2 infection', Nature Medicine, vol. 27, pp. 1205 - 1211, http://dx.doi.org/10.1038/s41591-021-01377-8

Cromer D; Reynaldi A; Steain M; Triccas J; Davenport M; Khoury D, 2021, 'Relating in vitro neutralisation level and protection in the CVnCoV (CUREVAC) trial', , http://dx.doi.org/10.1101/2021.06.29.21259504

Rebelo M; Pawliw R; Gower J; Webb L; Mitchell H; Pava Z; Watts RE; Davenport MP; McCarthy JS; Khoury DS, 2021, 'Parasite Viability as a Superior Measure of Antimalarial Drug Activity in Humans', Journal of Infectious Diseases, vol. 223, pp. 2154 - 2163, http://dx.doi.org/10.1093/infdis/jiaa678

Lee WS; Selva KJ; Davis SK; Wines BD; Reynaldi A; Esterbauer R; Kelly HG; Haycroft ER; Tan HX; Juno JA; Wheatley AK; Hogarth PM; Cromer D; Davenport MP; Chung AW; Kent SJ, 2021, 'Decay of Fc-dependent antibody functions after mild to moderate COVID-19', Cell Reports Medicine, vol. 2, pp. 100296, http://dx.doi.org/10.1016/j.xcrm.2021.100296

Cromer D; Juno JA; Khoury D; Reynaldi A; Wheatley AK; Kent SJ; Davenport MP, 2021, 'Prospects for durable immune control of SARS-CoV-2 and prevention of reinfection', Nature Reviews Immunology, vol. 21, pp. 395 - 404, http://dx.doi.org/10.1038/s41577-021-00550-x

Immonen TT; Fennessey CM; Lipkey L; Thorpe A; Del Prete GQ; Lifson JD; Davenport MP; Keele BF, 2021, 'Transient viral replication during analytical treatment interruptions in SIV infected macaques can alter the rebound-competent viral reservoir', PLoS Pathogens, vol. 17, pp. e1009686, http://dx.doi.org/10.1371/journal.ppat.1009686

Pymm P; Adair A; Chan LJ; Cooney JP; Mordant FL; Allison CC; Lopez E; Haycroft ER; O'Neill MT; Tan LL; Dietrich MH; Drew D; Doerflinger M; Dengler MA; Scott NE; Wheatley AK; Gherardin NA; Venugopal H; Cromer D; Davenport MP; Pickering R; Godfrey DI; Purcell DFJ; Kent SJ; Chung AW; Subbarao K; Pellegrini M; Glukhova A; Tham WH, 2021, 'Nanobody cocktails potently neutralize SARS-CoV-2 D614G N501Y variant and protect mice', Proceedings of the National Academy of Sciences of the United States of America, vol. 118, http://dx.doi.org/10.1073/pnas.2101918118

Okoye AA; Duell DD; Fukazawa Y; Varco-Merth B; Marenco A; Behrens H; Chaunzwa M; Selseth AN; Gilbride RM; Shao J; Edlefsen PT; Geleziunas R; Pinkevych M; Davenport MP; Busman-Sahay K; Nekorchuk M; Park H; Smedley J; Axthelm MK; Estes JD; Hansen SG; Keele BF; Lifson JD; Picker LJ, 2021, 'CD8⁺T cells fail to limit SIV reactivation following ART withdrawal until after viral amplification', Journal of Clinical Investigation, vol. 131, http://dx.doi.org/10.1172/JCI141677

Okoye AA; Duell DD; Fukazawa Y; Varco-Merth B; Marenco A; Behrens H; Chaunzwa M; Selseth AN; Gilbride RM; Shao J; Edlefsen PT; Geleziunas R; Pinkevych M; Davenport MP; Busman-Sahay K; Nekorchuk M; Park H; Smedley J; Axthelm MK; Estes JD; Hansen SG; Keele BF; Lifson JD; Picker LJ, 2021, 'CD8(+) T cells fail to limit SIV reactivation following ART withdrawal until after viral amplification', JOURNAL OF CLINICAL INVESTIGATION, vol. 131, http://dx.doi.org/10.1172/JCI141677

Selva KJ; Davis SK; Haycroft ER; Lee WS; Lopez E; Reynaldi A; Davenport MP; Kent HE; Juno JA; Chung AW; Kent SJ, 2021, 'Tear antibodies to SARS-CoV-2: implications for transmission', Clinical and Translational Immunology, vol. 10, pp. e1354, http://dx.doi.org/10.1002/cti2.1354

Khoury D; Cromer D; Reynaldi A; Schlub T; Wheatley A; Juno J; Subbarao K; Kent S; Triccas J; Davenport M, 2021, 'What level of neutralising antibody protects from COVID-19?', , http://dx.doi.org/10.1101/2021.03.09.21252641

Selva K; Davis S; Haycroft E; Lee WS; Lopez E; Reynaldi A; Davenport M; Kent H; Juno J; Chung A; Kent S, 2021, 'Tear antibodies to SARS-CoV-2: implications for transmission', , http://dx.doi.org/10.1101/2021.08.02.21261479

Cromer D; Steain M; Reynaldi A; Schlub T; Wheatley A; Juno J; Kent S; Triccas J; Khoury D; Davenport M, 2021, 'SARS-CoV-2 variants: levels of neutralisation required for protective immunity', , http://dx.doi.org/10.1101/2021.08.11.21261876

Soon MSF; Lee HJ; Engel JA; Straube J; Thomas BS; Pernold CPS; Clarke LS; Laohamonthonkul P; Haldar RN; Williams CG; Lansink LIM; Moreira ML; Bramhall M; Koufariotis LT; Wood S; Chen X; James KR; Lönnberg T; Lane SW; Belz GT; Engwerda CR; Khoury DS; Davenport MP; Svensson V; Teichmann SA; Haque A, 2020, 'Transcriptome dynamics of CD4⁺ T cells during malaria maps gradual transit from effector to memory', Nature Immunology, vol. 21, pp. 1597 - 1610, http://dx.doi.org/10.1038/s41590-020-0800-8

Khoury DS; Wheatley AK; Ramuta MD; Reynaldi A; Cromer D; Subbarao K; O’Connor DH; Kent SJ; Davenport MP, 2020, 'Measuring immunity to SARS-CoV-2 infection: comparing assays and animal models', Nature Reviews Immunology, vol. 20, pp. 727 - 738, http://dx.doi.org/10.1038/s41577-020-00471-1

Ju Y; Kelly HG; Dagley LF; Reynaldi A; Schlub TE; Spall SK; Bell CA; Cui J; Mitchell AJ; Lin Z; Wheatley AK; Thurecht KJ; Davenport MP; Webb AI; Caruso F; Kent SJ, 2020, 'Person-specific biomolecular coronas modulate nanoparticle interactions with immune cells in human blood', ACS Nano, vol. 14, pp. 15723 - 15737, http://dx.doi.org/10.1021/acsnano.0c06679

Khoury DS; Cao P; Zaloumis SG; Davenport MP, 2020, 'Artemisinin Resistance and the Unique Selection Pressure of a Short-acting Antimalarial', Trends in Parasitology, vol. 36, pp. 884 - 887, http://dx.doi.org/10.1016/j.pt.2020.07.004

Juno JA; Tan HX; Lee WS; Reynaldi A; Kelly HG; Wragg K; Esterbauer R; Kent HE; Batten CJ; Mordant FL; Gherardin NA; Pymm P; Dietrich MH; Scott NE; Tham WH; Godfrey DI; Subbarao K; Davenport MP; Kent SJ; Wheatley AK, 2020, 'Humoral and circulating follicular helper T cell responses in recovered patients with COVID-19', Nature Medicine, vol. 26, pp. 1428 - 1434, http://dx.doi.org/10.1038/s41591-020-0995-0

Wu Y; Pinkevych M; Xu Z; Keele BF; Davenport MP; Cromer D, 2020, 'Impact of fluctuation in frequency of human immunodeficiency virus/simian immunodeficiency virus reactivation during antiretroviral therapy interruption', Proceedings of the Royal Society B: Biological Sciences, vol. 287, pp. 20200354, http://dx.doi.org/10.1098/rspb.2020.0354

Davenport MP; Smith NL; Rudd BD, 2020, 'Building a T cell compartment: how immune cell development shapes function', Nature Reviews Immunology, vol. 20, pp. 499 - 506, http://dx.doi.org/10.1038/s41577-020-0332-3

Corder RM; de Lima ACP; Khoury DS; Docken SS; Davenport MP; Ferreira MU, 2020, 'Quantifying and preventing plasmodium vivax recurrences in primaquine-untreated pregnant women: An observational and modeling study in Brazil', PLoS Neglected Tropical Diseases, vol. 14, pp. 1 - 16, http://dx.doi.org/10.1371/journal.pntd.0008526

Khoury DS; Zaloumis SG; Grigg MJ; Haque A; Davenport MP; Cromer D; Rebelo M; Cao P; McCaw JM; Simpson JA; Flegg JA; Wilson DW; Anstey NM; McCarthy JS, 2020, 'Malaria Parasite Clearance: What Are We Really Measuring?', Trends in Parasitology, vol. 36, pp. 413 - 426, http://dx.doi.org/10.1016/j.pt.2020.02.005

Vanderven HA; Barr I; Reynaldi A; Wheatley AK; Wines BD; Davenport MP; Hogarth PM; Kent SJ, 2020, 'Fc functional antibody responses to adjuvanted versus unadjuvanted seasonal influenza vaccination in community-dwelling older adults', Vaccine, vol. 38, pp. 2368 - 2377, http://dx.doi.org/10.1016/j.vaccine.2020.01.066

Immonen TT; Camus C; Reid C; Fennessey CM; Del Prete GQ; Davenport MP; Lifson JD; Keele BF, 2020, 'Genetically barcoded SIV reveals the emergence of escape mutations in multiple viral lineages during immune escape', Proceedings of the National Academy of Sciences of the United States of America, vol. 117, pp. 494 - 502, http://dx.doi.org/10.1073/pnas.1914967117

Khanal S; Fennessey CM; O'Brien SP; Thorpe A; Reid C; Immonen TT; Smith R; Bess JW; Swanstrom AE; Del Prete GQ; Davenport MP; Okoye AA; Picker LJ; Lifson JD; Keele BF, 2020, 'In vivo validation of the viral barcoding of simian immunodeficiency virus SIVmac239 and the development of new barcoded SIV and subtype B and C simian-human immunodeficiency viruses', Journal of Virology, vol. 94, http://dx.doi.org/10.1128/JVI.01420-19

Smith CJ; Venturi V; Quigley MF; Turula H; Gostick E; Ladell K; Hill BJ; Himelfarb D; Quinn KM; Greenaway HY; Dang THY; Seder RA; Douek DC; Hill AB; Davenport MP; Price DA; Snyder CM, 2020, 'Stochastic expansions maintain the clonal stability of CD8⁺ T cell populations undergoing memory inflation driven by murine cytomegalovirus', Journal of Immunology, vol. 204, pp. 112 - 121, http://dx.doi.org/10.4049/jimmunol.1900455

Pinkevych M; Fennessey CM; Cromer D; Reid C; Trubey CM; Lifson JD; Keele BF; Davenport MP, 2019, 'Predictors of SIV recrudescence following antiretroviral treatment interruption', eLife, vol. 8, http://dx.doi.org/10.7554/eLife.49022

Liu J; Hill BJ; Darko S; Song K; Quigley MF; Asher TE; Morita Y; Greenaway HY; Venturi V; Douek DC; Davenport MP; Price DA; Roederer M, 2019, 'The peripheral differentiation of human natural killer T cells', Immunology and Cell Biology, vol. 97, pp. 586 - 596, http://dx.doi.org/10.1111/imcb.12248

Kent SJ; Davenport MP, 2019, 'Moving the HIV vaccine field forward: concepts of protective immunity', The Lancet HIV, vol. 6, pp. e406 - e410, http://dx.doi.org/10.1016/S2352-3018(19)30134-1

Khoury DS; Cromer D; Möhrle JJ; McCarthy JS; Davenport MP, 2019, 'Corrigendum: Defining the effectiveness of antimalarial chemotherapy: Investigation of the lag in parasite clearance following drug administration (Journal of Infectious Diseases (2016) 214 (753-761) DOI: 10.1093/infdis/jiw234)', Journal of Infectious Diseases, vol. 219, pp. 1852 - 1853, http://dx.doi.org/10.1093/infdis/jiy729

Akter J; Khoury DS; Aogo R; Lansink LIM; SheelaNair A; Thomas BS; Laohamonthonkul P; Pernold CPS; Dixon MWA; Soon MSF; Fogg LG; Engel JA; Elliott T; Sebina I; James KR; Cromer D; Davenport MP; Haque A, 2019, 'Plasmodium-specific antibodies block in vivo parasite growth without clearing infected red blood cells', PLoS Pathogens, vol. 15, pp. e1007599, http://dx.doi.org/10.1371/journal.ppat.1007599

Reynaldi A; Dent AE; Schlub TE; Ogolla S; Rochford R; Davenport MP, 2019, 'Interaction between maternally derived antibodies and heterogeneity in exposure combined to determine time-to-first Plasmodium falciparum infection in Kenyan infants', Malaria Journal, vol. 18, pp. 19, http://dx.doi.org/10.1186/s12936-019-2657-6

Parsons MS; Lee WS; Kristensen AB; Amarasena T; Khoury G; Wheatley AK; Reynaldi A; Wines BD; Hogarth PM; Davenport MP; Kent SJ, 2019, 'Fc-dependent functions are redundant to efficacy of anti-HIV antibody PGT121 in macaques', Journal of Clinical Investigation, vol. 129, pp. 182 - 191, http://dx.doi.org/10.1172/JCI122466

Davenport MP; Khoury DS; Cromer D; Lewin SR; Kelleher AD; Kent SJ, 2019, 'Functional cure of HIV: the scale of the challenge', Nature Reviews Immunology, vol. 19, pp. 45 - 54, http://dx.doi.org/10.1038/s41577-018-0085-4

Reynaldi A; Smith NL; Schlub TE; Tabilas C; Venturi V; Rudd BD; Davenport MP, 2019, 'Fate mapping reveals the age structure of the peripheral T cell compartment', Proceedings of the National Academy of Sciences of the United States of America, vol. 116, pp. 3974 - 3981, http://dx.doi.org/10.1073/pnas.1811634116

Deleage C; Immonen TT; Fennessey CM; Reynaldi A; Reid C; Newman L; Lipkey L; Schlub TE; Camus C; O'Brien S; Smedley J; Conway JM; Del Prete GQ; Davenport MP; Lifson JD; Estes JD; Keele BF, 2019, 'Defining early SIV replication and dissemination dynamics following vaginal transmission', Science Advances, vol. 5, pp. eaav7116, http://dx.doi.org/10.1126/sciadv.aav7116

Charon J; Grigg MJ; Eden JS; Piera KA; Rana H; William T; Rose K; Davenport MP; Anstey NM; Holmes EC, 2019, 'Novel RNA viruses associated with Plasmodium vivax in human malaria and Leucocytozoon parasites in avian disease', PLoS Pathogens, vol. 15, pp. e1008216, http://dx.doi.org/10.1371/journal.ppat.1008216

Pino M; King C; Shim I; Wang H; Nguyen K; Samer S; Harper J; Lifson J; Reynaldi A; Deleage C; Padhan K; Cervasi B; Davenport MP; Petrovas C; Lederman MM; Paiardini M, 2019, 'Fingolimod treatment at ART initiation delays SIV rebound after ART interruption', Journal of Virus Eradication, vol. 5, pp. 3 - 3, http://dx.doi.org/10.1016/s2055-6640(20)31078-5

Stern J; Roche M; Solomon A; Dantanarayana A; Reynaldi A; Davenport M; Deeks SG; Hartogenesis W; Hecht FM; Cockerham L; Lewin SR, 2019, 'Cell-associated HIV RNA and the ratio of HIV RNA to DNA have circadian cycles in HIV-positive individuals on antiretoviral therapy', Journal of Virus Eradication, vol. 5, pp. 10 - 10, http://dx.doi.org/10.1016/s2055-6640(20)31037-2

Betts M; Kuri Cervantes L; Pampena MB; Samer S; Khoury D; Frank I; Paiardini M; Davenport M; Bar K; Veazey R, 2019, 'Peripheral blood SIV/HIV originates from infected cells in tissues', Journal of Virus Eradication, vol. 5, pp. 27 - 27, http://dx.doi.org/10.1016/s2055-6640(20)30142-4

Zaloumis SG; Cao P; Dini S; Davenport MP; Cromer D; Khoury DS; Fowkes FJI; McCaw JM; Simpson JA, 2018, 'In silico investigation of the decline in clinical efficacy of artemisinin combination therapies due to increasing artemisinin and partner drug resistance', Antimicrobial Agents and Chemotherapy, vol. 62, http://dx.doi.org/10.1128/AAC.01292-18

Aogo RA; Khoury DS; Cromer D; Elliott T; Akter J; Fogg LG; Nair AS; Liligeto UN; Soon MSF; Thomas BS; Pernold CPS; Romanczuk AS; Laohamonthonkul P; Haque A; Davenport MP, 2018, 'Quantification of host-mediated parasite clearance during blood-stage Plasmodium infection and anti-malarial drug treatment in mice', International Journal for Parasitology, vol. 48, pp. 903 - 913, http://dx.doi.org/10.1016/j.ijpara.2018.05.010

Khoury DS; Aogo R; Randriafanomezantsoa-Radohery G; McCaw JM; Simpson JA; McCarthy JS; Haque A; Cromer D; Davenport MP, 2018, 'Within-host modeling of blood-stage malaria', Immunological Reviews, vol. 285, pp. 168 - 193, http://dx.doi.org/10.1111/imr.12697

Smithey MJ; Venturi V; Davenport MP; Buntzman AS; Vincent BG; Frelinger JA; Nikolich-Žugich J, 2018, 'Lifelong CMV infection improves immune defense in old mice by broadening the mobilized TCR repertoire against third-party infection', Proceedings of the National Academy of Sciences of the United States of America, vol. 115, pp. E6817 - E6825, http://dx.doi.org/10.1073/pnas.1719451115

Smith NL; Patel RK; Reynaldi A; Grenier JK; Wang J; Watson NB; Nzingha K; Yee Mon KJ; Peng SA; Grimson A; Davenport MP; Rudd BD, 2018, 'Developmental Origin Governs CD8⁺ T Cell Fate Decisions during Infection', Cell, vol. 174, pp. 117 - 130.e14, http://dx.doi.org/10.1016/j.cell.2018.05.029

Parsons MS; Cromer D; Davenport MP; Kent SJ, 2018, 'HIV Reactivation after Partial Protection by Neutralizing Antibodies', Trends in Immunology, vol. 39, pp. 359 - 366, http://dx.doi.org/10.1016/j.it.2017.12.006

Aliota MT; Dudley DM; Newman CM; Weger-Lucarelli J; Stewart LM; Koenig MR; Breitbach ME; Weiler AM; Semler MR; Barry GL; Zarbock KR; Haj AK; Moriarty RV; Mohns MS; Mohr EL; Venturi V; Schultz-Darken N; Peterson E; Newton W; Schotzko ML; Simmons HA; Mejia A; Hayes JM; Capuano S; Davenport MP; Friedrich TC; Ebel GD; O’Connor SL; O’Connor DH, 2018, 'Molecularly barcoded Zika virus libraries to probe in vivo evolutionary dynamics', PLoS Pathogens, vol. 14, http://dx.doi.org/10.1371/journal.ppat.1006964

Pinkevych M; Fennessey CM; Cromer D; Tolstrup M; Søgaard OS; Rasmussen TA; Keele BF; Davenport MP, 2018, 'Estimating initial viral levels during simian immunodeficiency virus/human immunodeficiency virus reactivation from latency', Journal of Virology, vol. 92, http://dx.doi.org/10.1128/JVI.01667-17

Khoury DS; Cromer D; Elliott T; Soon MSF; Thomas BS; James KR; Best SE; Aogo RA; Engel JA; Gartlan KH; Akter J; Sebina I; Haque A; Davenport MP, 2017, 'Characterising the effect of antimalarial drugs on the maturation and clearance of murine blood-stage Plasmodium parasites in vivo', International Journal for Parasitology, vol. 47, pp. 913 - 922, http://dx.doi.org/10.1016/j.ijpara.2017.05.009

Cromer D; Pinkevych M; Rasmussen TA; Lewin SR; Kent SJ; Davenport MP, 2017, 'Modeling of antilatency treatment in HIV: What is the optimal duration of antiretroviral therapy-free HIV remission?', Journal of Virology, vol. 91, http://dx.doi.org/10.1128/JVI.01395-17

Lloyd SB; Niven KP; Kiefel BR; Montefiori DC; Reynaldi A; Davenport MP; Kent SJ; Winnall WR, 2017, 'Exploration of broadly neutralizing antibody fragments produced in bacteria for the control of HIV', Human Vaccines and Immunotherapeutics, vol. 13, pp. 2726 - 2737, http://dx.doi.org/10.1080/21645515.2017.1368935

Cao P; Klonis N; Zaloumis S; Khoury DS; Cromer D; Davenport MP; Tilley L; Simpson JA; McCaw JM, 2017, 'A mechanistic model quantifies artemisinin-induced parasite growth retardation in blood-stage Plasmodium falciparum infection', Journal of Theoretical Biology, vol. 430, pp. 117 - 127, http://dx.doi.org/10.1016/j.jtbi.2017.07.017

Parsons MS; Lloyd SB; Lee WS; Kristensen AB; Amarasena T; Center RJ; Keele BF; Lifson JD; La Branche CC; Montefiori D; Wine BD; Hogarth PM; Swiderek KM; Venturi V; Davenport MP; Kent SJ, 2017, 'Partial efficacy of a broadly neutralizing antibody against cell-associated SHIV infection', Science Translational Medicine, vol. 9, http://dx.doi.org/10.1126/scitranslmed.aaf1483

Lee WS; Kristensen AB; Rasmussen TA; Tolstrup M; Østergaard L; Søgaard OS; Wines BD; Mark Hogarth P; Reynaldi A; Davenport MP; Emery S; Amin J; Cooper DA; Kan VL; Fox J; Gruell H; Parsons MS; Kent SJ, 2017, 'Anti-HIV-1 ADCC antibodies following latency reversal and treatment interruption', Journal of Virology, vol. 91, http://dx.doi.org/10.1128/JVI.00603-17

Khoury DS; Cromer D; Akter J; Sebina I; Elliott T; Thomas BS; Soon MSF; James KR; Best SE; Haque A; Davenport MP, 2017, 'Host-mediated impairment of parasite maturation during blood-stage Plasmodium infection', Proceedings of the National Academy of Sciences of the United States of America, vol. 114, pp. 7701 - 7706, http://dx.doi.org/10.1073/pnas.1618939114

Vanderven HA; Liu L; Ana-Sosa-Batiz F; Nguyen THO; Wan Y; Wines B; Mark Hogarth P; Tilmanis D; Reynaldi A; Parsons MS; Hurt AC; Davenport MP; Kotsimbos T; Cheng AC; Kedzierska K; Zhang X; Xu J; Kent SJ, 2017, 'Fc functional antibodies in humans with severe H7N9 and seasonal influenza', Journal of Clinical Investigation, vol. 2, http://dx.doi.org/10.1172/jci.insight.92750

Petravic J; Rasmussen TA; Lewin SR; Kent SJ; Davenport MP, 2017, 'Relationship between measures of HIV reactivation and decline of the latent reservoir under latencyreversing agents', Journal of Virology, vol. 91, http://dx.doi.org/10.1128/JVI.02092-16

Fennessey CM; Pinkevych M; Immonen TT; Reynaldi A; Venturi V; Nadella P; Reid C; Newman L; Lipkey L; Oswald K; Bosche WJ; Trivett MT; Ott DE; Estes JD; Del Prete GQ; Lifson JD; Davenport MP; Keele BF, 2017, 'Genetically-barcoded SIV facilitates enumeration of rebound variants and estimation of reactivation rates in nonhuman primates following interruption of suppressive antiretroviral therapy', PLoS Pathogens, vol. 13, http://dx.doi.org/10.1371/journal.ppat.1006359

Lee WS; Kristensen AB; Tolstrup M; Østergaard L; Søgaard OS; Wines BD; Hogarth PM; Reynaldi A; Davenport M; Emery S; Amin J; Cooper DA; Kan V; Fox J; Grüll H; Parsons MS; Kent SJ; Rasmussen TA, 2017, '13 HIV-1-specific ADCC following anti-latency therapy and analytical treatment interruption', Journal of Virus Eradication, vol. 3, pp. 10 - 10, http://dx.doi.org/10.1016/s2055-6640(20)30718-4

Griffin P; Pasay C; Elliott S; Sekuloski S; Sikulu M; Hugo L; Khoury D; Cromer D; Davenport M; Sattabongkot J; Ivinson K; Ockenhouse C; McCarthy J, 2016, 'Safety and Reproducibility of a Clinical Trial System Using Induced Blood Stage Plasmodium vivax Infection and Its Potential as a Model to Evaluate Malaria Transmission', PLoS Neglected Tropical Diseases, vol. 10, http://dx.doi.org/10.1371/journal.pntd.0005139

Alinejad-Rokny H; Anwar F; Waters SA; Davenport MP; Ebrahimi D, 2016, 'Source of CpG depletion in the HIV-1 genome', Molecular Biology and Evolution, vol. 33, pp. 3205 - 3212, http://dx.doi.org/10.1093/molbev/msw205

Reynaldi A; Schlub TE; Piriou E; Ogolla S; Sumba OP; Moormann AM; Rochford R; Davenport MP, 2016, 'Modeling of EBV Infection and Antibody Responses in Kenyan Infants with Different Levels of Malaria Exposure Shows Maternal Antibody Decay is a Major Determinant of Early EBV Infection', Journal of Infectious Diseases, vol. 214, pp. 1390 - 1398, http://dx.doi.org/10.1093/infdis/jiw396

Reynaldi A; Smith NL; Schlub TE; Venturi V; Rudd BD; Davenport MP, 2016, 'Modeling the dynamics of neonatal CD8⁺ T-cell responses', Immunology and Cell Biology, vol. 94, pp. 838 - 848, http://dx.doi.org/10.1038/icb.2016.47

Khoury DS; Cromer D; Möhrle JJ; McCarthy JS; Davenport MP, 2016, 'Defining the effectiveness of antimalarial chemotherapy: Investigation of the lag in parasite clearance following drug administration', Journal of Infectious Diseases, vol. 214, pp. 753 - 761, http://dx.doi.org/10.1093/infdis/jiw234

Pinkevych M; Cromer D; Tolstrup M; Grimm AJ; Cooper DA; Lewin SR; Søgaard OS; Rasmussen TA; Kent SJ; Kelleher AD; Davenport MP, 2016, 'Erratum: HIV Reactivation from Latency after Treatment Interruption Occurs on Average Every 5-8 Days-Implications for HIV Remission (PLoS Pathogens (2015) 11:7 (e1005000) DOI: 10.1371/journal.ppat.1005000)', PLoS Pathogens, vol. 12, pp. e1005745, http://dx.doi.org/10.1371/journal.ppat.1005745

Pinkevych M; Kent SJ; Tolstrup M; Lewin SR; Cooper DA; Søgaard OS; Rasmussen TA; Kelleher AD; Cromer D; Davenport MP, 2016, 'Modeling of Experimental Data Supports HIV Reactivation from Latency after Treatment Interruption on Average Once Every 5–8 Days', PLoS Pathogens, vol. 12, http://dx.doi.org/10.1371/journal.ppat.1005740

Adekunle AI; Cromer D; Davenport MP, 2016, 'Artemisinin-Based Treatments in Pregnant Women with Malaria', The New England journal of medicine, vol. 375, pp. 283, http://dx.doi.org/10.1056/NEJMc1604709#SA1

D'Alessandro U; PREGACT Study Group , 2016, 'Artemisinin-Based Treatments in Pregnant Women with Malaria.', N Engl J Med, vol. 375, pp. 283 - 284, http://dx.doi.org/10.1056/NEJMc1604709

Younes SA; Freeman ML; Mudd JC; Shive CL; Reynaldi A; Panigrahi S; Estes JD; Deleage C; Lucero C; Anderson J; Schacker TW; Davenport MP; McCune JM; Hunt PW; Lee SA; Serrano-Villar S; Debernardo RL; Jacobson JM; Canaday DH; Sekaly RP; Rodriguez B; Sieg SF; Lederman MM, 2016, 'IL-15 promotes activation and expansion of CD8⁺ T cells in HIV-1 infection', Journal of Clinical Investigation, vol. 126, pp. 2745 - 2756, http://dx.doi.org/10.1172/JCI85996

Lloyd SB; Lichtfuss M; Amarasena TH; Alcantara S; De Rose R; Tachedjian G; Alinejad-Rokny H; Venturi V; Davenport MP; Winnall WR; Kent SJ, 2016, 'High fidelity simian immunodeficiency virus reverse transcriptase mutants have impaired replication in vitro and in vivo', Virology, vol. 492, pp. 1 - 10, http://dx.doi.org/10.1016/j.virol.2016.02.008

Ortiz AM; Carnathan DG; Yu J; Sheehan KM; Kim P; Reynaldi A; Vanderford TH; Klatt NR; Brenchley JM; Davenport MP; Silvestri G, 2016, 'Analysis of the in vivo turnover of CD4+ T-cell subsets in chronically SIV-infected sooty mangabeys', PLoS ONE, vol. 11, http://dx.doi.org/10.1371/journal.pone.0156352

Cromer D; Schlub TE; Smyth RP; Grimm AJ; Chopra A; Mallal S; Davenport MP; Mak J, 2016, 'HIV-1 mutation and recombination rates are different in macrophages and T-cells', Viruses, vol. 8, http://dx.doi.org/10.3390/v8040118

Reynaldi A; Schlub TE; Chelimo K; Sumba PO; Piriou E; Ogolla S; Moormann AM; Rochford R; Davenport MP, 2016, 'Impact of Plasmodium falciparum Coinfection on Longitudinal Epstein-Barr Virus Kinetics in Kenyan Children', Journal of Infectious Diseases, vol. 213, pp. 985 - 991, http://dx.doi.org/10.1093/infdis/jiv525

Venturi V; Nzingha K; Amos TG; Charles WC; Dekhtiarenko I; Cicin-Sain L; Davenport MP; Rudd BD, 2016, 'The neonatal CD8⁺ T cell repertoire rapidly diversifies during persistent viral infection', Journal of Immunology, vol. 196, pp. 1604 - 1616, http://dx.doi.org/10.4049/jimmunol.1501867

Cromer D; Grimm AJ; Schlub TE; Mak J; Davenport MP, 2016, 'Estimating the in-vivo HIV template switching and recombination rate', AIDS, vol. 30, pp. 185 - 192, http://dx.doi.org/10.1097/QAD.0000000000000936

2016, 'Oral abstracts of the 21st International AIDS Conference 18-22 July 2016, Durban, South Africa.', J Int AIDS Soc, vol. 19, pp. 21264, http://dx.doi.org/10.7448/IAS.19.6.21264

Pinkevych M; Reynaldi A; Fennessey C; Reid C; Nadella P; Lipkey L; Newman L; Ayala V; Jain S; Del Prete G; Estes J; Ott D; Lifson J; Ohlen C; Keele B; Davenport M, 2016, 'OA2-1 Frequent and ‘burst-like’ reactivation from latency in SIVmac239M infected macaques', Journal of Virus Eradication, vol. 2, pp. 2 - 2, http://dx.doi.org/10.1016/s2055-6640(20)31008-6

Haqqani AA; Marek SL; Kumar J; Davenport M; Wang H; Tilton JC, 2015, 'Central memory CD4+ T cells are preferential targets of double infection by HIV-1 Retroviruses', Virology Journal, vol. 12, http://dx.doi.org/10.1186/s12985-015-0415-0

Pinkevych M; Cromer D; Tolstrup M; Grimm AJ; Cooper DA; Lewin SR; Søgaard OS; Rasmussen TA; Kent SJ; Kelleher AD; Davenport MP, 2015, 'HIV Reactivation from Latency after Treatment Interruption Occurs on Average Every 5-8 Days—Implications for HIV Remission', PLoS Pathogens, vol. 11, http://dx.doi.org/10.1371/journal.ppat.1005000

Khoury DS; Cromer D; Best SE; James KR; Sebina I; Haque A; Davenport MP, 2015, 'Reduced erythrocyte susceptibility and increased host clearance of young parasites slows Plasmodium growth in a murine model of severe malaria', Scientific Reports, vol. 5, http://dx.doi.org/10.1038/srep09412

Martyushev AP; Petravic J; Grimm AJ; Alinejad-Rokny H; Gooneratne SL; Reece JC; Cromer D; Kent SJ; Davenport MP, 2015, 'Epitope-specific CD8⁺ T cell kinetics rather than viral variability determine the timing of immune escape in simian immunodeficiency virus infection', Journal of Immunology, vol. 194, pp. 4112 - 4121, http://dx.doi.org/10.4049/jimmunol.1400793

Waugh C; Cromer D; Grimm A; Chopra A; Mallal S; Davenport M; Mak J, 2015, 'A general method to eliminate laboratory induced recombinants during massive, parallel sequencing of cDNA library', Virology Journal, vol. 12, http://dx.doi.org/10.1186/s12985-015-0280-x

Pinkevych M; Petravic J; Bereczky S; Rooth I; Färnert A; Davenport MP, 2015, 'Understanding the relationship between plasmodium falciparum growth rate and multiplicity of infection', Journal of Infectious Diseases, vol. 211, pp. 1121 - 1127, http://dx.doi.org/10.1093/infdis/jiu561

Adekunle AI; Pinkevych M; McGready R; Luxemburger C; White LJ; Nosten F; Cromer D; Davenport MP, 2015, 'Modeling the Dynamics of Plasmodium vivax Infection and Hypnozoite Reactivation In Vivo', PLoS Neglected Tropical Diseases, vol. 9, http://dx.doi.org/10.1371/journal.pntd.0003595

Tey SK; Davenport MP; Hill GR; Kennedy GA; Durrant ST; Khanna R; Cromer D, 2015, 'Post transplant CMV-specific T-cell immune reconstitution in the absence of global T-cell immunity is associated with a high risk of subsequent virus reactivation', Bone Marrow Transplantation, vol. 50, pp. 315 - 316, http://dx.doi.org/10.1038/bmt.2014.265

Pinkevych M; Chelimo K; Vulule J; Kazura JW; Moormann AM; Davenport MP, 2015, 'Time-to-infection by Plasmodium falciparum is largely determined by random factors', BMC Medicine, vol. 13, http://dx.doi.org/10.1186/s12916-014-0252-9

Liehl P; Meireles P; Albuquerque IS; Pinkevych M; Baptista F; Mota MM; Davenport MP; Prudêncio M, 2015, 'Innate immunity induced by Plasmodium liver infection inhibits malaria reinfections', Infection and Immunity, vol. 83, pp. 1172 - 1180, http://dx.doi.org/10.1128/IAI.02796-14

Hill BJ; Darrah PA; Ende Z; Ambrozak DR; Quinn KM; Darko S; Gostick E; Wooldridge L; Van Den Berg HA; Venturi V; Larsen M; Davenport MP; Seder RA; Price DA; Douek DC, 2014, 'Epitope specificity delimits the functional capabilities of vaccine-induced CD8 T cell populations', Journal of Immunology, vol. 193, pp. 5626 - 5636, http://dx.doi.org/10.4049/jimmunol.1401017

Micci L; Alvarez X; Iriele RI; Ortiz AM; Ryan ES; McGary CS; Deleage C; McAtee BB; He T; Apetrei C; Easley K; Pahwa S; Collman RG; Derdeyn CA; Davenport MP; Estes JD; Silvestri G; Lackner AA; Paiardini M, 2014, 'CD4 Depletion in SIV-Infected Macaques Results in Macrophage and Microglia Infection with Rapid Turnover of Infected Cells', PLoS Pathogens, vol. 10, http://dx.doi.org/10.1371/journal.ppat.1004467

Micci L; Iriele R; Alvarez X; Ortiz A; Midkiff C; McGary C; Davenport M; Estes J; Lackner A; Silvestri G; Paiardini M, 2014, 'EXPERIMENTAL CD4 DEPLETION PRIOR TO SIV INFECTION IN MACAQUES RESULTS IN ENCEPHALITIS, MASSIVE MACROPHAGES AND MICROGLIA INFECTION, AND RAPID TURNOVER OF INFECTED CELLS', JOURNAL OF MEDICAL PRIMATOLOGY, vol. 43, pp. 380 - 380, https://www.webofscience.com/api/gateway?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=LinksAMR&KeyUT=WOS:000342673700017&DestLinkType=FullRecord&DestApp=ALL_WOS&UsrCustomerID=891bb5ab6ba270e68a29b250adbe88d1

Smith NL; Wissink E; Wang J; Pinello JF; Davenport MP; Grimson A; Rudd BD, 2014, 'Rapid proliferation and differentiation impairs the development of memory CD8⁺ T cells in early life', Journal of Immunology, vol. 193, pp. 177 - 184, http://dx.doi.org/10.4049/jimmunol.1400553

Davenport M, 2014, 'A spectrum of (avoidable) HIV latency?', MICROBIOLOGY AUSTRALIA, vol. 35, pp. 95 - 96, http://dx.doi.org/10.1071/MA14029

Reece JC; Martyushev A; Petravic J; Grimm A; Gooneratne S; Amaresena T; De Rose R; Loh L; Davenport MP; Kent SJ, 2014, 'Measuring turnover of SIV DNA in resting CD4+ T cells using pyrosequencing: Implications for the timing of HIV eradication therapies', PLoS ONE, vol. 9, http://dx.doi.org/10.1371/journal.pone.0093330

Schlub TE; Grimm AJ; Smyth RP; Cromer D; Chopra A; Mallal S; Venturi V; Waugh C; Mak J; Davenport MP, 2014, 'Fifteen to twenty percent of HIV substitution mutations are associated with recombination', Journal of Virology, vol. 88, pp. 3837 - 3849, http://dx.doi.org/10.1128/JVI.03136-13

Smyth RP; Schlub TE; Grimm AJ; Waugh C; Ellenberg P; Chopra A; Mallal S; Cromer D; Mak J; Davenport MP, 2014, 'Identifying Recombination Hot Spots in the HIV-1 Genome', Journal of Virology, vol. 88, pp. 2891 - 2902, http://dx.doi.org/10.1128/JVI.03014-13

Ebrahimi D; Alinejad-Rokny H; Davenport MP, 2014, 'Insights into the motif preference of APOBEC3 enzymes', PLoS ONE, vol. 9, http://dx.doi.org/10.1371/journal.pone.0087679

Petravic J; Ellenberg P; Chan ML; Paukovics G; Smyth RP; Mak J; Davenport MP, 2014, 'Intracellular dynamics of HIV infection', Journal of Virology, vol. 88, pp. 1113 - 1124, http://dx.doi.org/10.1128/JVI.02038-13

McGary CS; Cervasi B; Chahroudi A; Micci L; Taaffe J; Meeker T; Silvestri G; Davenport MP; Paiardini M, 2014, 'Increased stability and limited proliferation of CD4⁺ central memory T cells differentiate nonprogressive simian immunodeficiency virus (SIV) infection of sooty mangabeys from progressive SIV infection of rhesus macaques', Journal of Virology, vol. 88, pp. 4533 - 4542, http://dx.doi.org/10.1128/JVI.03515-13

Pinkevych M; Petravic J; Chelimo K; Vulule J; Kazura JW; Moormann AM; Davenport MP, 2014, 'Decreased growth rate of P. falciparum blood stage parasitemia with age in a holoendemic population', Journal of Infectious Diseases, vol. 209, pp. 1136 - 1143, http://dx.doi.org/10.1093/infdis/jit613

Jiang W; Souheil-Antoine Y; Funderburg NT; Mudd JC; Espinosa E; Davenport MP; Babineau DC; Sieg SF; Lederman MM, 2014, 'Cycling memory CD4⁺ T cells in HIV disease have a diverse T cell receptor repertoire and a phenotype consistent with bystander activation', Journal of Virology, vol. 88, pp. 5369 - 5380, http://dx.doi.org/10.1128/JVI.00017-14

Petravic J; Martyushev A; Reece JC; Kent SJ; Davenport MP, 2014, 'Modeling the timing of antilatency drug administration during HIV treatment', Journal of Virology, vol. 88, pp. 14050 - 14056, http://dx.doi.org/10.1128/JVI.01701-14

Gooneratne SL; Alinejad-Rokny H; Ebrahimi D; Bohn PS; Wiseman RW; O'Connor DH; Davenport MP; Kent SJ, 2014, 'Linking pig-tailed macaque major histocompatibility complex class I haplotypes and cytotoxic T lymphocyte escape mutations in simian immunodeficiency virus infection', Journal of Virology, vol. 88, pp. 14310 - 14325, http://dx.doi.org/10.1128/JVI.02428-14

Kent SJ; Davenport MP, 2014, 'Tentative first steps to eradicate latent HIV', The Lancet HIV, vol. 1, pp. e2 - e3, http://dx.doi.org/10.1016/S2352-3018(14)70015-3

Fergusson JR; Smith KE; Fleming VM; Rajoriya N; Newell EW; Simmons R; Marchi E; Björkander S; Kang YH; Swadling L; Kurioka A; Sahgal N; Lockstone H; Baban D; Freeman GJ; Sverremark-Ekström E; Davis MM; Davenport MP; Venturi V; Ussher JE; Willberg CB; Klenerman P, 2014, 'CD161 defines a transcriptional and functional phenotype across distinct human T cell lineages', Cell Reports, vol. 9, pp. 1075 - 1088, http://dx.doi.org/10.1016/j.celrep.2014.09.045

Pastori C; Diomede L; Venuti A; Fisher G; Jarvik J; Bomsel M; Sanvito F; Lopalco L, 2014, 'Induction of HIV-blocking anti-CCR5 IgA in Peyers's patches without histopathological alterations.', J Virol, vol. 88, pp. 3623 - 3635, http://dx.doi.org/10.1128/JVI.03663-13

Jegaskanda S; Amarasena TH; Laurie KL; Tan HX; Butler J; Parsons MS; Alcantara S; Petravic J; Davenport MP; Hurt AC; Reading PC; Kent SJ, 2013, 'Standard trivalent influenza virus protein vaccination does not prime antibody-dependent cellular cytotoxicity in macaques', Journal of Virology, vol. 87, pp. 13706 - 13718, http://dx.doi.org/10.1128/JVI.01666-13

Pinkevych M; Petravic J; Chelimo K; Vulule J; Kazura JW; Moormann AM; Davenport MP, 2013, 'Density-dependent blood stage Plasmodium falciparum suppresses malaria super-infection in a malaria holoendemic population', American Journal of Tropical Medicine and Hygiene, vol. 89, pp. 850 - 856, http://dx.doi.org/10.4269/ajtmh.13-0049

Khoury DS; Cromer D; Best SE; James KR; Kim PS; Engwerda CR; Haque A; Davenport MP, 2013, 'Effect of mature, blood-stage Plasmodium parasite sequestration on pathogen biomass in mathematical and in vivo models of malaria.', Infection and Immunity, vol. 82, pp. 212 - 220, http://dx.doi.org/10.1128/IAI.00705-13

Petravic J; Vanderford TH; Silvestri G; Davenport M, 2013, 'Estimating the contribution of the gut to plasma viral load in early SIV infection', Retrovirology, vol. 10, http://dx.doi.org/10.1186/1742-4690-10-105

Tey SK; Kennedy GA; Cromer D; Davenport MP; Walker S; Jones LI; Crough T; Durrant ST; Morton JA; Butler JP; Misra AK; Hill GR; Khanna R, 2013, 'Clinical Assessment of Anti-Viral CD8+ T Cell Immune Monitoring Using QuantiFERON-CMV® Assay to Identify High Risk Allogeneic Hematopoietic Stem Cell Transplant Patients with CMV Infection Complications', PLoS ONE, vol. 8, http://dx.doi.org/10.1371/journal.pone.0074744

Venturi V; Rudd BD; Davenport MP, 2013, 'Specificity, promiscuity, and precursor frequency in immunoreceptors', Current Opinion in Immunology, vol. 25, pp. 639 - 645, http://dx.doi.org/10.1016/j.coi.2013.07.001

Davenport MP; Dunn-Walters DK, 2013, 'Immunogenetics and transplantation', Current Opinion in Immunology, vol. 25, pp. 606 - 607, http://dx.doi.org/10.1016/j.coi.2013.09.001

Davenport MP; Dunn-Walters DK, 2013, 'Immunogenetics and transplantation', Current Opinion in Immunology, http://dx.doi.org/10.1016/j.coi.2013.09.001

Reece J; Petravic J; Balamurali M; Loh L; Gooneratne S; De Rose R; Kent SJ; Davenport MP, 2013, 'Correction: An “Escape Clock” for Estimating the Turnover of SIV DNA in Resting CD4+ T Cells', PLoS Pathogens, vol. 9, http://dx.doi.org/10.1371/annotation/7556ed6f-2d66-48a9-be38-4aefe4400393

Rudd BD; Venturi V; Smith NL; Nzingha K; Goldberg EL; Li G; Nikolich-Zugich J; Davenport MP, 2013, 'Acute Neonatal Infections 'Lock-In' a Suboptimal CD8+ T Cell Repertoire with Impaired Recall Responses', PLoS Pathogens, vol. 9, http://dx.doi.org/10.1371/journal.ppat.1003572

Venturi V; Rudd BD; Davenport MP, 2013, 'Specificity, promiscuity, and precursor frequency in immunoreceptors', Current Opinion in Immunology, http://dx.doi.org/10.1016/j.coi.2013.07.001

Kent SJ; Reece JC; Petravic J; Martyushev A; Kramski M; De Rose R; Cooper DA; Kelleher AD; Emery S; Cameron PU; Lewin SR; Davenport MP, 2013, 'The search for an HIV cure: Tackling latent infection', The Lancet Infectious Diseases, vol. 13, pp. 614 - 621, http://dx.doi.org/10.1016/S1473-3099(13)70043-4

Reece JC; Alcantara S; Gooneratne S; Jegaskanda S; Amaresena T; Fernandez CS; Laurie K; Hurt A; O'Connor SL; Harris M; Petravic J; Martyushev A; Grimm A; Davenport MP; Stambas J; De Rose R; Kent SJ, 2013, 'Trivalent live attenuated influenza-simian immunodeficiency virus vaccines: Efficacy and evolution of cytotoxic T lymphocyte escape in macaques', Journal of Virology, vol. 87, pp. 4146 - 4160, http://dx.doi.org/10.1128/JVI.02645-12

Greenaway HY; Ng B; Price D; Douek DC; Davenport MP; Venturi V, 2013, 'NKT and MAIT invariant TCRalpha sequences can be produced efficiently by VJ gene recombination', Immunobiology, vol. 218, pp. 213 - 224, http://dx.doi.org/10.1016/j.imbio.2012.04.003

Anwar F; Davenport MP; Ebrahimi Mohammadi D, 2013, 'Footprint of APOBEC3 on the genome of human retroelements', Journal of Virology, vol. 87, pp. 8195 - 8204, http://dx.doi.org/10.1128/JVI.00298-13

Plotkin SA; Robinson HL; Davenport MP, 2012, 'Mining the mechanisms of an HIV vaccine.', Nature medicine, vol. 18, pp. 1020 - 1021

Valkenburg SA; Venturi V; Dang THY; Bird NL; Doherty PC; Turner SJ; Davenport MP; Kedzierska K, 2012, 'Correction: Early Priming Minimizes the Age-Related Immune Compromise of CD8⁺T Cell Diversity and Function', PLoS Pathogens, vol. 8, http://dx.doi.org/10.1371/annotation/e142f9de-7f30-4759-bda1-a651e86d5ba6

Valkenburg SA; Venturi V; Dang THY; Bird NL; Doherty PC; Turner SJ; Davenport MP; Kedzierska K, 2012, 'Early priming minimizes the age-related immune compromise of CD8 + T cell diversity and function', PLoS Pathogens, vol. 8, pp. Article number e1002544, http://dx.doi.org/10.1371/journal.ppat.1002544

Kedzierska K; Valkenburg S; Doherty PC; Davenport MP; Venturi V, 2012, 'Use it or lose it: establishment and persistence of T cell memory', Frontiers in Immunology, vol. 3, pp. 1 - 11, http://dx.doi.org/10.3389/fimmu.2012.00357

Smithey MJ; Li G; Venturi V; Davenport MP; Nikolich-Zugich J, 2012, 'Lifelong persistent viral infection alters the naive T cell pool, impairing CD8 T cell immunity in late life', Journal of Immunology, vol. 189, pp. 5356 - 5366, http://dx.doi.org/10.4049/jimmunol.1201867

Venturi V; Davenport MP; Doherty PC; Kedzierska K, 2012, 'Consequences of suboptimal priming are apparent for low-avidity T-cell responses', Immunology and Cell Biology, vol. 90, pp. 216 - 223, http://dx.doi.org/10.1038/icb.2011.36

Pinkevych M; Petravic J; Chelimo K; Kazura J; Moormann A; Davenport MP, 2012, 'The Dynamics of Naturally Acquired Immunity to Plasmodium falciparum Infection', PLoS Computational Biology, vol. 8, pp. Article number e1002729, http://dx.doi.org/10.1371/journal.pcbi.1002729

Reece J; Petravic J; Balamurali M; Loh L; De Rose R; Kent SJ; Davenport MP, 2012, 'An “Escape clock” for estimating the turnover of SIV DNA in resting CD4+ T cells', PLoS Pathogens, vol. 8, pp. e1002615, http://dx.doi.org/10.1371/journal.ppat.1002615

Ebrahimi Mohammadi D; Anwar F; Davenport MP, 2012, 'APOBEC3G and APOBEC3F rarely co-mutate the same HIV genome', Retrovirology, vol. 9, pp. 113, http://dx.doi.org/10.1186/1742-4690-9-113

Smyth R; Davenport MP; Mak J, 2012, 'The origins of genetic diversity in HIV-1', Virus Research, vol. 169, pp. 415 - 429, http://dx.doi.org/10.1016/j.virusres.2012.06.015

Davenport MP, 2012, 'Mining the mechanisms of an HIV vaccine', Nature Medicine, vol. 18, pp. 1020 - 1021, http://dx.doi.org/10.1038/nm.2858

Schlub TE; Sun JC; Walton SM; Robbins SH; Pinto AK; Munks MW; Hill AB; Brossay L; Oxenius A; Davenport MP, 2011, 'Comparing the kinetics of NK cells, CD4, and CD8 T cells in murine cytomegalovirus infection', Journal of Immunology, vol. 187, pp. 1385 - 1392, http://dx.doi.org/10.4049/jimmunol.1100416

Davenport MP; Schlub T; Sun JC; Walton SM; Robbins SH; Pinto AK; Munks MW; Brossay L; Hill AB; Oxenius A, 2011, 'Comparing the Kinetics of NK Cells, CD4, and CD8 T Cells in Murine Cytomegalovirus Infection', Journal of Immunology, vol. 187, pp. 1385 - 1392, http://dx.doi.org/10.4049/jimmunol.1190037

Paiardini M; Cervasi B; Reyes-Aviles E; Micci L; Ortiz AM; Chahroudi AM; Vinton C; Gordon SN; Bosinger SE; Francella N; Hallberg PL; Schlub T; Chan ML; Riddick NE; Collman RG; Apetrei C; Pandrea I; Else JG; Munch J; Kirchhoff F; Davenport MP; Brenchley JM; Silvestri G; Cramer EM, 2011, 'Low levels of SIV infection in sooty mangabey central memory CD4 + T cells are associated with limited CCR5 expression', Nature Medicine, vol. 17, pp. 830 - 836, http://dx.doi.org/10.1038/nm.2395

Rudd BD; Venturi V; Li G; Samadder P; Ertelt JM; Way SS; Davenport MP; Nikolich-Zugich J, 2011, 'Nonrandom attrition of the naive CD8+ T-cell pool with aging governed by T-cell receptor: pMHC interactions', Proceedings of the National Academy of Sciences of the United States of America, vol. 108, pp. 13694 - 13699, http://dx.doi.org/10.1073/pnas.1107594108

Petravic J; Davenport MP, 2011, 'Simian-human immunodeficiency infection - is the course set in the acute phase?', PLoS One, vol. 6, pp. e17180 - e17189, http://dx.doi.org/10.1371/journal.pone.0017180

Davenport MP; Ebrahimi Mohammadi D; Anwar F, 2011, 'APOBEC3 Has Not Left an Evolutionary Footprint on the HIV-1 Genome', Journal of Virology, vol. 85, pp. 9139 - 9146, http://dx.doi.org/10.1128/JVI.00658-11

Miles JJ; Bulek AM; Cole DK; Gostick E; Schauenburg AJ; Dolton G; Venturi V; Davenport MP; Tan MP; Burrows SR; Wooldridge L; Price DA; Rizkallah PJ; Sewell AK, 2010, 'Genetic and structural basis for selection of a ubiquitous T cell receptor deployed in Epstein-Barr virus infection', PLoS Pathogens, vol. 6, pp. e1001198, http://dx.doi.org/10.1371/journal.ppat.1001198

Coupland LA; Cromer D; Davenport MP; Parish CR, 2010, 'A novel fluorescent-based assay reveals that thrombopoietin signaling and Bcl-X(L) influence, respectively, platelet and erythrocyte lifespans', Experimental Hematology, vol. 38, pp. 453 - 461, http://dx.doi.org/10.1016/j.exphem.2010.03.003

Smyth RP; Schlub TE; Grimm A; Venturi V; Chopra A; Mallal S; Davenport MP; Mak J, 2010, 'Reducing chimera formation during PCR amplification to ensure accurate genotyping', Gene, vol. 469, pp. 45 - 51, http://dx.doi.org/10.1016/j.gene.2010.08.009

Quigley MF; Greenaway HY; Venturi V; Lindsay R; Quinn KM; Seder RA; Douek DC; Davenport MP; Price DA, 2010, 'Convergent recombination shapes the clonotypic landscape of the naïve T-cell repertoire', Proceedings of the National Academy of Sciences of the United States of America, vol. 107, pp. 19414 - 19419, http://dx.doi.org/10.1073/pnas.1010586107

Rudd BD; Venturi V; Smithey MJ; Way SS; Davenport MP; Nikolich-Zugich J, 2010, 'Diversity of the CD8+ T Cell repertoire elicited against an immunodominant epitope does not depend on the context of infection', Journal of Immunology, vol. 184, pp. 2958 - 2965, http://dx.doi.org/10.4049/jimmunol.0903493

Reece JC; Loh L; Alcantara S; Fernandez CS; Stambas J; Sexton A; De Rose R; Petravic J; Davenport MP; Kent SJ, 2010, 'Timing of immune escape linked to success or failure of vaccination', PLoS One, vol. 5, pp. 1 - 7, http://dx.doi.org/10.1371/journal.pone.0012774

Mrass P; Petravic J; Davenport MP; Weninger W, 2010, 'Cell-autonomous and environmental contributions to the interstitial migration of T cells', Seminars In Immunopathology, vol. 32, pp. 257 - 274, http://dx.doi.org/10.1007/s00281-010-0212-1

Davenport MP; Petravic J, 2010, 'CD8+ T cell control of HIV-- a known unknown', PLoS Pathogens, vol. 6, pp. e1000728, http://dx.doi.org/10.1371/journal.ppat.1000728

Liang SX; Pinkevych M; Khachigian LM; Parish CR; Davenport MP; Chong BH, 2010, 'Drug-induced thrombocytopenia (DITP): development of a novel NOD/SCID mouse model to evaluate clearance of circulating platelets by drug-dependent antibodies and the efficacy of IVIG', Blood, vol. 116, pp. 1958 - 1960, http://dx.doi.org/10.1182/blood-2010-02-268326

Rajasuriar R; Booth D; Solomon A; Chua K; Spelman T; Gouillou M; Schlub TE; Davenport MP; Crowe S; Elliott J; Hoy J; Fairley C; Stewart G; Cameron P; Lewin SR, 2010, 'Biological determinants of immune reconstitution in HIV-infected patients receiving antiretroviral therapy: the role of IL 7/IL-7Ra and microbial translocation', Journal of Infectious Diseases, vol. 202, pp. 1254 - 1264, http://dx.doi.org/10.1086/656369

Schlub TE; Smyth RP; Grimm AJ; Mak J; Davenport MP, 2010, 'Accurately measuring recombination between closely related HIV-1 genomes', PLoS Computational Biology, vol. 6, pp. e1000766, http://dx.doi.org/10.1371/journal.pcbi.1000766

Schlub TE; Badovinac VP; Sabel JT; Harty JT; Davenport MP, 2010, 'Predicting CD62L expression during the CD8+ T-cell response in vivo', Immunology and Cell Biology, vol. 88, pp. 157 - 164, http://dx.doi.org/10.1038/icb.2009.80

Venturi V; Chin HY; Asher TE; Ladell K; Scheinberg P; Bornstein E; Van Bockel D; Kelleher AD; Douek DC; Price DA; Davenport MP, 2009, 'TCR β-chain sharing in human CD8⁺ T cell responses to cytomegalovirus and EBV', Journal of Immunology, vol. 181, pp. 7853 - 7862, http://dx.doi.org/10.4049/jimmunol.181.11.7853

Loh L; Reece J; Petravic J; Center R; Davenport M; Kent SJ, 2009, 'P09-08. The complexity of the infecting inoculum determines the outcome of infection', Retrovirology, vol. 6, http://dx.doi.org/10.1186/1742-4690-6-S3-P121

Lay MD; Zhang L; Ribeiro RM; Mueller SN; Belz GT; Davenport MP, 2009, 'Kinetics of major histocompatibility class I antigen presentation in acute infection', Journal of Immunology, vol. 182, pp. 902 - 911, http://dx.doi.org/10.4049/jimmunol.182.2.902

Cromer D; Stark J; Davenport MP, 2009, 'Low red cell production may protect against severe anemia during a malaria infection--insights from modeling', Journal of Theoretical Biology, vol. 257, pp. 533 - 542, http://dx.doi.org/10.1016/j.jtbi.2008.12.019

Kedzierska K; Valkenburg SA; Guillonneau C; Hubert FX; Cukalac T; Curtis JM; Stambas J; Scott HS; Kedzierski L; Venturi V; Davenport MP, 2009, 'Diversity and clonotypic composition of influenza-specific CD8+ TCR repertoires remain unaltered in the absence of Aire', European Journal of Immunology, vol. 40, pp. 849 - 858, http://dx.doi.org/10.1002/eji.200939918

Cukalac T; Moffat JM; Venturi V; Davenport MP; Doherty PC; Turner SJ; Stambas J, 2009, 'Narrowed TCR diversity for immunised mice challenged with recombinant influenza A-HIV Env(311-320) virus.', Vaccine, vol. 27, pp. 6755 - 6761, http://dx.doi.org/10.1016/j.vaccine.2009.08.079

Greenaway HY; Kurniawan M; Price DA; Douek DC; Davenport MP; Venturi V, 2009, 'Extraction and characterization of the rhesus macaque T-cell receptor beta-chain genes', Immunology and Cell Biology, vol. 87, pp. 546 - 553, http://dx.doi.org/10.1038/icb.2009.38

Price DA; Asher TE; Wilson NA; Nason MC; Brenchley JM; Metzler IS; Venturi V; Gostick E; Chattopadhyay PK; Roederer M; Davenport MP; Watkins DI; Douek DC, 2009, 'Public clonotype usage identifies protective Gag-specific CD8+ T cell responses in SIV infection', Journal of Experimental Medicine, vol. 206, pp. 923 - 936, http://dx.doi.org/10.1084/jem.20081127

Schlub TE; Venturi V; Kedzierska K; Wellard C; Doherty PC; Turner SJ; Ribeiro RM; Hodgkin PD; Davenport MP, 2009, 'Division-linked differentiation can account for CD8+ T-cell phenotype in vivo', European Journal of Immunology, vol. 39, pp. 67 - 77, http://dx.doi.org/10.1002/eji.200838554

Lay MD; Petravic J; Gordon SN; Engram J; Silvestri G; Davenport MP, 2009, 'Is the gut the major source of virus in early simian immunodeficiency virus infection?', Journal of Virology, vol. 83, pp. 7517 - 7523, http://dx.doi.org/10.1128/JVI.00552-09

Loh L; Reece JC; Fernandez CS; Alcantara S; Center R; Purcell DF; Balamurali M; Petravic J; Davenport MP; Kent SJ; Howard J, 2009, 'Complexity of the inoculum determines the rate of reversion of SIV Gag CD8 T cell mutant virus and outcome of infection', PLoS Pathogens, vol. 5, pp. e1000378, http://dx.doi.org/10.1371/journal.ppat.1000378

Davenport MP; Belz GT; Ribeiro RM, 2009, 'The race between infection and immunity: how do pathogens set the pace?', Trends in Immunology, vol. 30, pp. 61 - 66, http://dx.doi.org/10.1016/j.it.2008.11.001

Yang H; Guimaraes-walker A; Hibbs S; Dong T; Stacey A; Borrow P; Hanke T; Davenport MP; Mcmichael A; Dorrell L, 2009, 'Interleukin-10 responses to therapeutic vaccination during highly active antiretroviral therapy and after analytical therapy interruption', AIDS, vol. 23, pp. 2226 - 2230

Loh L; Petravic J; Batten CJ; Davenport MP; Kent SJ, 2008, 'Vaccination and timing influence SIV immune escape viral dynamics in vivo', PLoS Pathogens, vol. 4, pp. 0027 - 0037, http://dx.doi.org/10.1371/journal.ppat.0040012

Chavez L; Davenport MP; Shiver JW; Tussey LG; Cox KS; Bachinsky M; Wang F; Huang L; Schleif WA; Davies ME; Tang A; Casimiro DR; Perelson AS; Ribeiro RM, 2008, 'The effect of early versus delayed challenge after vaccination in controlling SHIV 89.6P infection', Virology, vol. 381, pp. 75 - 80, http://dx.doi.org/10.1016/j.virol.2008.07.042

Venturi V; Chin HY; Asher TE; Ladell K; Scheinberg P; Bornstein E; van Bockel D; Kelleher AD; Douek DC; Price DA; Davenport MP, 2008, 'TCR beta-chain sharing in human CD8+ T cell responses to cytomegalovirus and EBV', Journal of Immunology, vol. 181, pp. 7853 - 7862

Venturi V; Chin HY; Price DA; Douek DC; Davenport MP, 2008, 'The Role of Production Frequency in the Sharing of Simian Immunodeficiency Virus-Specific CD8+ TCRs between Macaques', Journal of Immunology, vol. 181, pp. 2597 - 2609, http://dx.doi.org/10.4049/jimmunol.181.4.2597

Kedzierska K; Thomas PG; Venturi V; Davenport MP; Doherty PC; Turner SJ; La Gruta NL, 2008, 'Terminal deoxynucleotidyltransferase is required for the establishment of private virus-specific CD8+ TCR repertoires and facilitates optimal CTL responses', Journal of Immunology, vol. 181, pp. 2556 - 2562, http://dx.doi.org/10.4049/jimmunol.181.4.2556

Smith MZ; Asher TE; Venturi V; Davenport MP; Douek DC; Price DA; Kent SJ, 2008, 'Limited maintenance of vaccine-induced simian immunodeficiency virus-specific CD8 T-cell receptor clonotypes after virus challenge', Journal of Virology, vol. 82, pp. 7357 - 7368, http://dx.doi.org/10.1128/JVI.00607-08

Venturi V; Price DA; Douek DC; Davenport MP, 2008, 'The molecular basis for public T-cell responses?', Nature Reviews Immunology, vol. 8, pp. 231 - 238, http://dx.doi.org/10.1038/nri2260

Venturi V; Kedzierska K; Tanaka MM; Turner SJ; Doherty PC; Davenport MP, 2008, 'Method for assessing the similarity between subsets of the T cell receptor repertoire', Journal of Immunological Methods, vol. 329, pp. 67 - 80, http://dx.doi.org/10.1016/j.jim.2007.09.016

Davenport MP; Loh L; Petravic J; Kent SJ, 2008, 'Rates of HIV immune escape and reversion: implications for vaccination', Trends in Microbiology, vol. 16, pp. 561 - 566, http://dx.doi.org/10.1016/j.tim.2008.09.001

Petravic J; Ribeiro RM; Casimiro DR; Mattapallil J; Roederer M; Shiver JW; Davenport MP, 2008, 'Estimating the impact of vaccination on acute simian-human immunodeficiency virus/simian immunodeficiency virus infections', Journal of Virology, vol. 82, pp. 11589 - 11598, http://dx.doi.org/10.1128/JVI.01596-08

Petravic J; Loh L; Kent SJ; Davenport MP, 2008, 'CD4+ target cell availability determines the dynamics of immune escape and reversion in vivo', Journal of Virology, vol. 82, pp. 4091 - 4101, http://dx.doi.org/10.1128/JVI.02552-07

Loh L; Petravic J; Batten CJ; Davenport MP; Kent SJ, 2008, 'Vaccination and timing influence SIV immune escape viral dynamics in vivo', PLoS Pathogens, vol. 4, pp. e12

Kedzierska K; Venturi V; Valkenburg SA; Davenport MP; Turner SJ; Doherty PC, 2008, 'Homogenization of TCR repertoires within secondary CD62Lhigh and CD62Llow virus-specific CD8+ T cell populations', Journal of Immunology, vol. 180, pp. 7938 - 7947, http://dx.doi.org/10.4049/jimmunol.180.12.7938

Rudd BD; Brien JD; Davenport MP; Nikolich-Zugich J, 2008, 'Cutting edge: TLR ligands increase TCR triggering by slowing peptide-MHC class I decay rates', Journal of Immunology, vol. 181, pp. 5199 - 5203, http://dx.doi.org/10.4049/jimmunol.181.8.5199

Melenhorst JJ; Lay MD; Price DA; Adams SD; Barrett AJ; Zeilah J; Sosa E; Hensel NF; Follmann D; Douek DC; Davenport MP, 2008, 'Contribution of TCR-β Locus and HLA to the Shape of the Mature Human Vβ Repertoire', Journal of Immunology, vol. 180, pp. 6484 - 6489

Triccas JA; Davenport MP, 2008, 'Infectious diseases:too little, too late for tuberculosis', Immunology and Cell Biology, vol. 86, pp. 293 - 294, http://dx.doi.org/10.1038/icb.2008.7

Karlsson AC; Iversen AKN; Chapman JM; de Oliveira T; Spotts G; McMichael AJ; Davenport MP; Hecht FM; Nixon DF, 2007, 'Sequential broadening of CTL responses in early HIV-1 infection is associated with viral escape', PLoS ONE, vol. 2, http://dx.doi.org/10.1371/journal.pone.0000225

Venturi V; Chin H; Asher T; Ladell K; Scheinberg P; Bornstein E; Van Bockel DJ; Kelleher AD; Douek DC; Price DA; Davenport MP, 2007, 'T cell receptor b-chain sharing in human CD8+ T cell responses to cytomegalovirus and Epstein-Barr virus', Journal of Immunology, vol. 181, pp. 7853 - 7862

Crough T; Fazou C; Weiss J; Campbell S; Davenport MP; Bell SC; Galbraith A; McNeil K; Khanna R, 2007, 'Symptomatic and asymptomatic viral recrudescence in solid-organ transplant recipients and its relationship with the antigen-specific CD8(+) T-cell response', Journal of Virology, vol. 81, pp. 11538 - 11542, http://dx.doi.org/10.1128/JVI.00581-07

Wilson DP; Mattapallil JJ; Lay MD; Zhang L; Roederer M; Davenport MP, 2007, 'Estimating the infectivity of CCR5-tropic simian immunodeficiency virus SIV(mac251) in the gut', Journal of Virology, vol. 81, pp. 8025 - 8029, http://dx.doi.org/10.1128/JVI.01771-06

Belz GT; Zhang L; Lay M; Kupresanin F; Davenport MP, 2007, 'Killer T cells regulate antigen presentation for early expansion of memory, but not naive, CD8+ T cell', Proceedings of the National Academy of Sciences of the United States of America, vol. 104, pp. 6341 - 6346, http://dx.doi.org/10.1073/pnas.0609990104

Davenport MP; Ribeiro RM; Zhang L; Wilson DP; Perelson AS, 2007, 'Understanding the mechanisms and limitations of immune control of HIV', Immunological Reviews, vol. 216, pp. 164 - 175, http://dx.doi.org/10.1111/j.1600-065X.2006.00485.x

Orr Y; Wilson DP; Taylor JM; Bannon PG; Geczy C; Davenport MP; Kritharides L, 2007, 'A kinetic model of bone marrow neutrophil production that characterizes late phenotypic maturation', American Journal of Physiology - Regulatory Integrative and Comparative Physiology, vol. 292, pp. R1707 - R1716, http://dx.doi.org/10.1152/ajpregu.00627.2006

van Bockel D; Price DA; Asher TE; Venturi V; Suzuki K; Warton K; Davenport MP; Cooper DA; Douek DC; Kelleher AD, 2007, 'Validation of RNA-based molecular clonotype analysis for virus-specific CD8+ T-cells in formaldehyde-fixed specimens isolated from peripheral blood', Journal of Immunological Methods, vol. 326, pp. 127 - 138, http://dx.doi.org/10.1016/j.jim.2007.07.016

Loh L; Batten CJ; Petravic J; Davenport MP; Kent SJ, 2007, 'In vivo fitness costs of different Gag CD8 T-cell escape mutant simian-human immunodeficiency viruses for macaques', Journal of Virology, vol. 81, pp. 5418 - 5422, http://dx.doi.org/10.1128/JVI.02763-06

Davenport MP; Price DA; Mcmichael AJ, 2007, 'The T cell repertoire in infection and vaccination: implications for control of persistent viruses', Current Opinion in Immunology, vol. 19, pp. 294 - 300, http://dx.doi.org/10.1016/j.coi.2007.04.001

Venturi V; Kedzierska K; Turner SJ; Doherty PC; Davenport MP, 2007, 'Methods for comparing the diversity of samples of the T cell receptor repertoire', Journal of Immunological Methods, vol. 321, pp. 182 - 195, http://dx.doi.org/10.1016/j.jim.2007.01.019

De Rose R; Batten CJ; Smith MZ; Fernandez CS; Peut V; Thomson S; Ramshaw IA; Coupar BE; Boyle DB; Venturi V; Davenport MP; Kent SJ, 2007, 'Comparative efficacy of subtype AE simian-human immunodeficiency virus priming and boosting vaccines in pigtail macaques', Journal of Virology, vol. 81, pp. 292 - 300, http://dx.doi.org/10.1128/JVI.01727-06

Fernandez CS; Smith MZ; Batten CJ; De Rose R; Reece JC; Rollman E; Venturi V; Davenport MP; Kent SJ, 2007, 'Vaccine-induced T cells control reversion of AIDS virus immune escape mutants', Journal of Virology, vol. 81, pp. 4137 - 4144, http://dx.doi.org/10.1128/JVI.02193-06

Ribeiro RM; Hazenberg MD; Perelson AS; Davenport MP, 2006, 'Naïve and memory cell turnover as drivers of CCR5-to-CXCR4 tropism switch in human immunodeficiency virus type 1: Implications for therapy', Journal of Virology, vol. 80, pp. 802 - 809, http://dx.doi.org/10.1128/JVI.80.2.802-809.2006

Venturi V; Kedzierska K; Price DA; Doherty PC; Douek DC; Turner SJ; Davenport MP, 2006, 'Sharing of T cell receptors in antigen-specific responses is driven by convergent recombination', Proceedings of the National Academy of Sciences of the United States of America, vol. 103, pp. 18691 - 18696

La Gruta NL; Kedzierska K; Pang K; Davenport MP; Chen W; Turner SJ; Doherty PC; Webby R, 2006, 'A virus-specific CD8+ T cell immunodominance hierarchy determined by antigen dose and precursor frequencies', Proceedings of the National Academy of Sciences of the United States of America, vol. 103, pp. 994 - 999, http://dx.doi.org/10.1073/pnas.0510429103

Davenport MP; Zhang L; Shiver JW; Casmiro DR; Ribeiro RM; Perelson AS, 2006, 'Influence of peak viral load on the extent of CD4+ T-cell depletion in simian HIV infection', JAIDS: Journal of Acquired Immune Deficiency Syndromes, vol. 41, pp. 259 - 265, http://dx.doi.org/10.1097/01.qai.0000199232.31340.d3

Cromer D; Evans KJ; Schofield L; Davenport MP, 2006, 'Preferential invasion of reticulocytes during late-stage Plasmodium berghei infection accounts for reduced circulating reticulocyte levels', International Journal for Parasitology, vol. 36, pp. 1389 - 1397, http://dx.doi.org/10.1016/j.ijpara.2006.07.009

Davenport MP; Venturi V; Kedzierska K; Price DA; Doherty PC; Douek DC; Turner SJ, 2006, 'Sharing of T cell receptors in antigen-specific responses is driven by convergent recombination', Proceedings of the National Academy of Sciences of the United States of America, vol. 103, pp. 18691 - 18696, http://dx.doi.org/10.1073/pnas.0608907103

Davenport MP; Venturi V; Kedzierska K; Field K; Turner SJ; Doherty PC, 2006, 'Early establishment of diverse T cell receptor profiles for influenza-specific CD8(+)CD62L(hi) memory T cells', Proceedings of the National Academy of Sciences of the United States of America, vol. 103, pp. 9184 - 9189, http://dx.doi.org/10.1073/pnas.0603289103

Davenport MP; Ribeiro RM; Hazenberg MD; Perelson AS, 2006, 'Naive and memory cell turnover as drivers of CCR5-to-CXCR4 tropism switch in human immunodeficiency virus type 1: implications for therapy', Journal of Virology, vol. 80, pp. 802 - 809, http://dx.doi.org/10.1128/JVI.80.2.802-809.2006

Godkin A; Davenport M; Hill AVS, 2005, 'Molecular analysis of HLA class II associations with hepatitis B virus clearance and vaccine non responsiveness', HEPATOLOGY, vol. 41, pp. 1383 - 1390, http://dx.doi.org/10.1002/hep.20716

Legrand FA; Abadi J; Jordan KA; Davenport MP; Deeks SG; Fennelly GJ; Wiznia AA; Nixon DF; Rosenberg MG, 2005, 'Partial treatment interruption of protease inhibitors augments HIV-specific immune responses in vertically infected pediatric patients', AIDS, vol. 19, pp. 1575 - 1585, http://dx.doi.org/10.1097/01.aids.0000186816.99993.8e

Davenport MP; Zhang L; Bagchi A; Fridman A; Fu TM; Schleif W; Shiver JW; Ribeiro RM; Perelson AS, 2005, 'High-potency human immunodeficiency virus vaccination leads to delayed and reduced CD8+ T-cell expansion but improved virus control', Journal of Virology, vol. 79, pp. 10059 - 10062, http://dx.doi.org/10.1128/JVI.79.15.10059-10062.2005

Chao DL; Davenport MP; Forrest S; Perelson AS, 2005, 'The effects of thymic selection on the range of T cell cross-reactivity', European Journal of Immunology, vol. 35, pp. 3452 - 3459, http://dx.doi.org/10.1002/eji.200535098

Kedzierska K; La Gruta NL; Davenport MP; Turner SJ; Doherty PC, 2005, 'Contribution of T cell receptor affinity to overall avidity for virus-specific CD8+ T cell responses', Proceedings of the National Academy of Sciences of the United States of America, vol. 102, pp. 11432 - 11437, http://dx.doi.org/10.1073/pnas.0504851102

Fernandez CS; Stratov I; De Rose R; Walsh K; Dale CJ; Smith MZ; Agy MB; Hu SL; Krebs K; Watkins DI; O Connor DH; Davenport MP; Kent SJ, 2005, 'Rapid viral escape at an immunodominant simian-human immunodeficiency virus cytotoxic T-lymphocyte epitope exacts a dramatic fitness cost', Journal of Virology, vol. 79, pp. 5721 - 5731, http://dx.doi.org/10.1128/JVI.79.9.5721-5731.2005

Crough T; Burrows JM; Fazou C; Walker S; Davenport MP; Khanna R, 2005, 'Contemporaneous fluctuations in T cell responses to persistent herpes virus infections', European Journal of Immunology, vol. 35, pp. 139 - 149, http://dx.doi.org/10.1002/eji.200425548

Wilson DP; Zhang L; Ribeiro R; Perelson AS; Davenport MP, 2005, 'Explaining mechanisms behind the virus-specific CD8+T lymphocyte response to a viral infection', Tissue Antigens, vol. 66, pp. 590 - 591, http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=LinksAMR&KeyUT=WOS:000233542700676&DestLinkType=FullRecord&DestApp=ALL_WOS&UsrCustomerID=891bb5ab6ba270e68a

Kent SJ; Fernandez CS; Dale CJ; Davenport MP, 2005, 'Reversion of immune escape HIV variants upon transmission: insights into effective viral immunity', Trends in Microbiology, vol. 13, pp. 243 - 246, http://dx.doi.org/10.1016/j.tim.2005.03.011

La Gruta N; Kedzierska K; Pang K; Webby R; Davenport MP; Chen W; Turner SJ; Doherty P, 2005, 'A virus specific CD8(+) T cell immunodominance hierarchy determined by precursor frequencies and antigen dose', Tissue Antigens, vol. 66, pp. 469 - 470, http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=LinksAMR&KeyUT=WOS:000233542700348&DestLinkType=FullRecord&DestApp=ALL_WOS&UsrCustomerID=891bb5ab6ba270e68a

Fernandez C; Stratov I; De Rose R; Batten J; Smith M; Agy M; Hu SK; Krebs K; Watkins D; O Connor D; Davenport MP; Kent S, 2005, 'Control of T cell escape mutant viruses by effector T cells at transmission: Implications for the requirements of vaccine induced immunity to HIV', Tissue Antigens, vol. 66, pp. 414 - 415, http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=LinksAMR&KeyUT=WOS:000233542700199&DestLinkType=FullRecord&DestApp=ALL_WOS&UsrCustomerID=891bb5ab6ba270e68a

Venturi V; Kedzierska K; Turner SJ; Doherty P; Davenport MP, 2005, 'High degree of sharing of T cell receptor chain sequences in `Private` T cell repertoire', Tissue Antigens, vol. 66, pp. 578 - 578, http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=LinksAMR&KeyUT=WOS:000233542700642&DestLinkType=FullRecord&DestApp=ALL_WOS&UsrCustomerID=891bb5ab6ba270e68a

Kedzierska K; La Gruta N; Davenport MP; Turner SJ; Doherty P, 2005, 'Dissection of the high avidity clonotypes in virus-specific CD8+T cells and their dependence on `public` versus `private` nature of the TCR repertoire', Federation of American Societies for Experimantal Biology Journal, vol. 19, pp. A401 - A402, http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=LinksAMR&KeyUT=WOS:000227610702575&DestLinkType=FullRecord&DestApp=ALL_WOS&UsrCustomerID=891bb5ab6ba270e68a

Smith MZ; Fernandez CS; Chung A; Dale CJ; De Rose R; Lin J; Brooks AG; Krebs KC; Watkins DI; O Connor DH; Davenport MP; Kent SJ, 2005, 'The pigtail macaque MHC class I allele Mane-A*10 presents an immundominant SIV Gag epitope:identification, tetramer development and implications of immune escape and reversion', Journal of Medical Primatology, vol. 34, pp. 282 - 293, http://dx.doi.org/10.1111/j.1600-0684.2005.00126.x

Zhang L; Ribeiro RM; Mascola JR; Lewis MG; Stiegler G; Katinger H; Perelson AS; Davenport MP, 2004, 'Effects of antibody on viral kinetics in simian/human immunodeficiency virus infection: implications for vaccination', Journal of Virology, vol. 78, pp. 5520 - 5522, http://dx.doi.org/10.1128/JVI.78.10.5520-5522.2004

Davenport MP; Ribeiro RM; Chao DL; Perelson AS, 2004, 'Predicting the impact of a nonsterilizing vaccine against human immunodeficiency virus', Journal of Virology, vol. 78, pp. 11340 - 11351, http://dx.doi.org/10.1128/JVI.78.20.11340-11351.2004

Davenport MP; Ribeiro RM; Perelson AS, 2004, 'Kinetics of virus-specific CD8+ T cells and the control of human immunodeficiency virus infection', Journal of Virology, vol. 78, pp. 10096 - 10103, http://dx.doi.org/10.1128/JVI.78.18.10096-10103.2004

Chao DL; Davenport MP; Forrest S; Perelson AS, 2004, 'A stochastic model of cytotoxic T cell responses', Journal of Theoretical Biology, vol. 228, pp. 227 - 240, http://dx.doi.org/10.1016/j.jtbi.2003.12.011

Chao DL; Davenport MP; Forrest S; Perelson AS, 2004, 'Modelling the impact of antigen kinetics on T-cell activation andresponse', Immunology and Cell Biology, vol. 82, pp. 55 - 61, http://dx.doi.org/10.1111/j.1440-1711.2004.01207.x

Chao DL; Davenport MP; Forrest S; Perelson AS, 2003, 'Stochastic stage-structured modeling of the adaptive immune system.', Proceedings / IEEE Computer Society Bioinformatics Conference. IEEE Computer Society Bioinformatics Conference., vol. 2, pp. 124 - 131

Murray JM; Kaufmann GR; Hodgkin PD; Lewin SR; Kelleher AD; Davenport MP; Zaunders JJ, 2003, 'Naive T cells maintained by thymic output in early ages but by proliferation without phenotypic change after age twenty', Immunology and Cell Biology, vol. 81, pp. 487 - 495, http://dx.doi.org/10.1046/j.1440-1711.2003.01191.x

GODKIN A; DAVENPORT M; THURSZ M; HILL A, 2003, '956 Molecular interactions of hepatitis B virus nucleocapsid and envelope peptides with HLA-DR1, -DR3, -DR7 and -DR13 glycoproteins', Hepatology, vol. 38, pp. 618 - 618, http://dx.doi.org/10.1016/s0270-9139(03)80994-1

Davenport MP; Ward RL; Hawkins NJ, 2002, 'The null oncogene hypothesis and protection from cancer', Journal of Medical Genetics, vol. 39, pp. 12 - 14

Davenport MP; Zaunders JJ; Hazenberg MD; Schuitemaker H; van Rij RP, 2002, 'Cell turnover and cell tropism in HIV-1 infection', Trends in Microbiology, vol. 10, pp. 275 - 278, http://dx.doi.org/10.1016/S0966-842X(02)02370-3

Davenport MP; Fazou C; Mcmichael AJ; Callan MF, 2002, 'Clonal selection, clonal senescence, and clonal succession: the evolution of the T cell response to infection with a persistent virus', Journal of Immunology, vol. 168, pp. 3309 - 3317, http://dx.doi.org/10.4049/jimmunol.168.7.3309

Morrison D; FitzPatrick D; Hanson I; Williamson K; van Heyningen V; Fleck B; Jones I; Chalmers J; Campbell H, 2002, 'National study of microphthalmia, anophthalmia, and coloboma (MAC) in Scotland: investigation of genetic aetiology.', J Med Genet, vol. 39, pp. 16 - 22, http://dx.doi.org/10.1136/jmg.39.1.16

Davenport MP; Post JJ, 2001, 'Rapid disease progression and the rate of spread of the HIV epidemic', AIDS, vol. 15, pp. 2055 - 2057, http://dx.doi.org/10.1097/00002030-200110190-00024

Davenport MP; Post JJ, 2001, 'Rapid disease and the rate of spread of the HIV epidemic', AIDS, vol. 15, pp. 2055 - 2059

Davenport MP, 2000, 'Benefits of memory.', Nature immunology, vol. 1, pp. 451

Davenport MP; Grimm MC; Lloyd AR, 2000, 'A homing selection hypothesis for T-cell trafficking', Immunology Today, vol. 21, pp. 315 - 317, http://dx.doi.org/10.1016/S0167-5699(00)01644-3

Davenport MP, 2000, 'Reversibility of HIV drug resistance', Science, vol. 288, pp. 1299a

Davenport MP, 2000, 'Benefits of memory', Nature Immunology, vol. 1, pp. 451, http://dx.doi.org/10.1038/82689

Harcourt GC; Garrard S; Davenport MP; Edwards A; Phillips RE, 1998, 'HIV-1 variation diminishes CD4 T lymphocyte recognition', Journal of Experimental Medicine, vol. 188, pp. 1785 - 1793, http://dx.doi.org/10.1084/jem.188.10.1785

Godkin AJ; Davenport MP; Willis A; Jewell DP; Hill AVS, 1998, 'Use of complete eluted peptide sequence data from HLA-DR and -DQ molecules to predict T cell epitopes, and the influence of the nonbinding terminal regions of ligands in epitope selection', Journal of Immunology, vol. 161, pp. 850 - 858

Gelder C; Davenport M; Barnardo M; Bourne T; Lamb J; Askonas B; Hill A; Welsh K, 1998, 'Six unrelated HLA-DR-matched adults recognize identical CD4⁺ T cell epitopes from influenza A haemagglutinin that are not simply peptides with high HLA-DR binding affinities', International Immunology, vol. 10, pp. 211 - 222, http://dx.doi.org/10.1093/intimm/10.2.211

Godkin A; Friede T; Davenport M; Stevanovic S; Willis A; Jewell D; Hill A; Rammensee HG, 1997, 'Use of eluted peptide sequence data to identify the binding characteristics of peptides to the insulin-dependent diabetes susceptibility allele HLA-DQ8 (DQ 3.2)', International Immunology, vol. 9, pp. 905 - 911, http://dx.doi.org/10.1093/intimm/9.6.905

Vessey SJR; Barouch DH; McAdam SN; Tussey LG; Davenport MA; O'Callaghan CA; Bell JI; McMichael AJ; Jakobsen BK, 1997, 'Engagement of a T cell receptor by major histocompatibility complex irrespective of peptide', European Journal of Immunology, vol. 27, pp. 879 - 885, http://dx.doi.org/10.1002/eji.1830270412

Davenport MP; Smith KJ; Barouch D; Reid SW; Bodnar WM; Willis AC; Hunt DF; Hill AVS, 1997, 'HLA class I binding motifs derived from random peptide libraries differ at the COOH terminus from those of eluted peptides', Journal of Experimental Medicine, vol. 185, pp. 367 - 371, http://dx.doi.org/10.1084/jem.185.2.367

Davenport MP; Godkin A; Friede T; Stevanović S; Willis AC; Hill AVS; Rammensee HG, 1997, 'A distinctive peptide binding motif for HLA-DRB1(*)0407, an HLA-DR4 subtype not associated with rheumatoid arthritis', Immunogenetics, vol. 45, pp. 229 - 232, http://dx.doi.org/10.1007/s002510050196

Davenport MP; Hill AVS, 1996, 'Reverse immunogenetics: From HLA-disease associations to vaccine candidates', Molecular Medicine Today, vol. 2, pp. 38 - 45, http://dx.doi.org/10.1016/1357-4310(96)88757-0

Davenport MP; Smith KJ; Hill AV, 1996, 'Evolution of allorecognition?', Immunology today, vol. 17, pp. 589 - 590, http://dx.doi.org/10.1016/S0167-5699(97)84208-9

Davenport MP; Quinn CL; Valsasnini P; Sinigaglia F; Hill AVS; Bell JI, 1996, 'Analysis of peptide-binding motifs for two disease associated HLA-DR13 alleles using an M13 phage display library', Immunology, vol. 88, pp. 482 - 486, http://dx.doi.org/10.1046/j.1365-2567.1996.d01-693.x

Barouch D; Davenport M; Mcmichael A; Reay P, 1995, 'A mAb against HLA-A2 can be influenced both positively and negatively by the associated peptide', International Immunology, vol. 7, pp. 1599 - 1605, http://dx.doi.org/10.1093/intimm/7.10.1599

Davenport MP, 1995, 'The promiscuous B27 hypothesis', The Lancet, vol. 346, pp. 500 - 501, http://dx.doi.org/10.1016/S0140-6736(95)91348-3

Davenport MP; Quinn CL; Chicz RM; Green BN; Willis AC; Lane WS; Bell JI; Hill AVS, 1995, 'Naturally processed peptides from two disease-resistance-associated HLA- DR13 alleles show related sequence motifs and the effects of the dimorphism at position 86 of the HLA-DRβ chain', Proceedings of the National Academy of Sciences of the United States of America, vol. 92, pp. 6567 - 6571, http://dx.doi.org/10.1073/pnas.92.14.6567

Davenport MP, 1995, 'Antagonists or altruists: do viral mutants modulate T-cell responses?', Immunology Today, vol. 16, pp. 432 - 436, http://dx.doi.org/10.1016/0167-5699(95)80020-4

Davenport MP; Ho Shon IA; Hill AV, 1995, 'An empirical method for the prediction of T-cell epitopes', Immunogenetics, vol. 42, pp. 392 - 397, http://dx.doi.org/10.1007/BF00179401

ROCHE PW; PEAKE PW; DAVENPORT MP; BRITTON WJ, 1994, 'Identification of a Mycobacterium leprae‐specific T cell epitope on the 70 kDa heat shock protein', Immunology and Cell Biology, vol. 72, pp. 215 - 221, http://dx.doi.org/10.1111/j.1440-1711.1994.tb03780.x

Hill AV; Yates SN; Allsopp CE; Gupta S; Gilbert SC; Lalvani A; Aidoo M; Davenport M; Plebanski M, 1994, 'Human leukocyte antigens and natural selection by malaria.', Philosophical transactions of the Royal Society of London. Series B, Biological sciences, vol. 346, pp. 379 - 385, http://dx.doi.org/10.1098/rstb.1994.0155

Peake PW; Britton WJ; Davenport MP; Roche PW; McKenzie KR, 1993, 'Analysis of B-cell epitopes in the variable C-terminal region of the Mycobacterium leprae 70-kilodalton heat shock protein', Infection and Immunity, vol. 61, pp. 135 - 141

Davenport MP; McKenzie KR; Basten A; Britton WJ, 1992, 'The variable C-terminal region of the Mycobacterium leprae 70-kilodalton heat shock protein is the target for humoral immune responses', Infection and Immunity, vol. 60, pp. 1170 - 1177

Pinkevych M; Reynaldi A; Fennessey C; Reid C; Nadella P; Lipkey L; Newman L; Ayala V; Jain S; Del Prete G; Estes J; Ott D; Lifson J; Ohlen C; Keele B; Davenport M, 2016, 'Frequent and "burst-like'' reactivation from latency in SIVmac239M infected macaques', in JOURNAL OF THE INTERNATIONAL AIDS SOCIETY, JOHN WILEY & SONS LTD, Vol. 19, https://www.webofscience.com/api/gateway?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=LinksAMR&KeyUT=WOS:000395394300134&DestLinkType=FullRecord&DestApp=ALL_WOS&UsrCustomerID=891bb5ab6ba270e68a29b250adbe88d1

Stadler E; Chai KL; Schlub T; Cromer D; Polizzotto M; Kent S; Beecher C; White H; White H; Turner T; Skoetz N; Skoetz N; Estcourt L; McQuilten Z; Wood E; Khoury D; Davenport M, 2022, Determinants of passive antibody efficacy in SARS-CoV-2 infection, http://dx.doi.org/10.1101/2022.03.21.22272672

Stadler E; Cromer D; Mehra S; Adekunle A; Flegg J; Anstey N; Watson J; Chu C; Mueller I; Robinson L; Schlub T; Davenport M; Khoury D, 2022, Risk of Plasmodium vivax recurrences follows a 30-70 rule and indicates relapse heterogeneity in the population, http://dx.doi.org/10.1101/2022.05.18.22275180

Koutsakos M; Lee WS; Reynaldi A; Tan H-X; Gare G; Kinsella P; Liew KC; Williamson DA; Kent HE; Stadler E; Cromer D; Khoury DS; Wheatley AK; Juno JA; Davenport MP; Kent SJ, 2021, Dynamics of immune recall following SARS-CoV-2 vaccination or breakthrough infection, http://dx.doi.org/10.1101/2021.12.23.21268285

Khoury D; Steain M; Triccas J; Sigal A; Davenport M; Cromer D, 2021, A meta-analysis of Early Results to predict Vaccine efficacy against Omicron, http://dx.doi.org/10.1101/2021.12.13.21267748

Goel RR; Painter MM; Apostolidis SA; Mathew D; Meng W; Rosenfeld AM; Lundgreen KA; Reynaldi A; Khoury DS; Pattekar A; Gouma S; Kuri-Cervantes L; Hicks P; Dysinger S; Hicks A; Sharma H; Herring S; Korte S; Baxter AE; Oldridge DA; Giles JR; Weirick ME; McAllister CM; Awofolaju M; Tanenbaum N; Drapeau EM; Dougherty J; Long S; D'Andrea K; Hamilton JT; McLaughlin M; Williams JC; Adamski S; Kuthuru O; UPenn COVID Processing Unit ; Frank I; Betts MR; Vella LA; Grifoni A; Weiskopf D; Sette A; Hensley SE; Davenport MP; Bates P; Luning Prak ET; Greenplate AR; Wherry EJ, 2021, mRNA Vaccination Induces Durable Immune Memory to SARS-CoV-2 with Continued Evolution to Variants of Concern., http://dx.doi.org/10.1101/2021.08.23.457229

Lansink LIM; Engel JA; Lee HJ; Soon MSF; Williams CG; SheelaNair A; Pernold CPS; Laohamonthonkul P; Akter J; Stoll T; Hill MM; Talman AM; Russell A; Lawniczak M; Davenport MP; Khoury DS; Haque A, 2021, Systemic host inflammation induces stage-specific transcriptomic modification and slower maturation in malaria parasites, http://dx.doi.org/10.1101/2021.08.18.456784

Golfinos AE; Gellerup DD; Schweigert H; Mathiaparanam J; Balgeman AJ; Weiler AM; Friedrich TC; Keele BF; Davenport MP; Venturi V; O'Connor SL, 2021, The Mucosal Barrier and Anti-Viral Immune Responses can Eliminate Portions of the Viral Population during Transmission and Early Viral Growth, http://dx.doi.org/10.20944/preprints202105.0206.v1

Moriarty RV; Fesser N; Sutton MS; Venturi V; Davenport MP; Schlub T; O'Connor SL, 2021, Validation of multiplex PCR sequencing assay of SIV, http://dx.doi.org/10.21203/rs.3.rs-35062/v2

Aggarwal A; Stella AO; Walker G; Akerman A; Milogiannakis V; Brilot F; Amatayakul-Chantler S; Roth N; Coppola G; Schofield P; Jackson J; Henry J; Mazigi O; Langley D; Lu Y; Forster C; McAllery S; Mathivanan V; Fichter C; Hoppe AC; Munier ML; Jack H-M; Cromer D; Darley D; Matthews G; Christ D; Khoury D; Davenport M; Rawlinson W; Kelleher A; Turville S, 2021, SARS-CoV-2 Omicron: evasion of potent humoral responses and resistance to clinical immunotherapeutics relative to viral variants of concern, http://dx.doi.org/10.1101/2021.12.14.21267772

Lee WS; Selva KJ; Davis SK; Wines BD; Reynaldi A; Esterbauer R; Kelly HG; Haycroft ER; Tan H-X; Juno JA; Wheatley AK; Hogarth PM; Cromer D; Davenport MP; Chung AW; Kent SJ, 2020, Decay of Fc-dependent antibody functions after mild to moderate COVID-19, http://dx.doi.org/10.1101/2020.12.13.20248143

Wheatley AK; Juno JA; Wang JJ; Selva KJ; Reynaldi A; Tan H-X; Shi Lee W; Wragg KM; Kelly HG; Esterbauer R; Davis SK; Kent HE; Mordant FL; Schlub TE; Gordon DL; Khoury DS; Subbarao K; Cromer D; Gordon TP; Chung AW; Davenport MP; Kent SJ, 2020, Evolution of immunity to SARS-CoV-2, http://dx.doi.org/10.1101/2020.09.09.20191205

Moriarty RV; Fesser N; Sutton MS; Venturi V; Davenport MP; Schlub T; O'Connor SL, 2020, Validation of multiplex PCR sequencing assay of SIV, http://dx.doi.org/10.21203/rs.3.rs-35062/v1

Juno JA; Tan H-X; Lee WS; Reynaldi A; Kelly HG; Wragg K; Esterbauer R; Kent HE; Batten CJ; Mordant FL; Gherardin NA; Pymm P; Dietrich MH; Scott NE; Tham W-H; Godfrey DI; Subbarao K; Davenport MP; Kent SJ; Wheatley AK, 2020, Immunogenic profile of SARS-CoV-2 spike in individuals recovered from COVID-19, http://dx.doi.org/10.1101/2020.05.17.20104869

Soon MSF; Lee HJ; Engel JA; Straube J; Thomas BS; Clarke LS; Laohamonthonkul P; Pernold CPS; Haldar RN; Williams CG; Lansink LIM; Koufariotis R; Lakis V; Wood S; Chen X; James KR; Lönnberg T; Lane SW; Davenport MP; Khoury DS; Svensson V; Teichmann SA; Haque A, 2019, Transcriptome Dynamics Reveals Progressive Transition from Effector to Memory in CD4⁺T cells, http://dx.doi.org/10.1101/675967

Aliota MT; Dudley DM; Newman CM; Weger-Lucarelli J; Stewart LM; Koenig MR; Breitbach ME; Weiler AM; Semler MR; Barry GL; Zarbock KR; Mohns MS; Mohr EL; Venturi V; Schultz-Darken N; Peterson E; Newton W; Schotzko ML; Simmons HA; Mejia A; Hayes JM; Capuano S; Davenport MP; Friedrich TC; Ebel GD; O’Connor SL; O’Connor DH, 2017, Molecularly barcoded Zika virus libraries to probein vivoevolutionary dynamics, http://dx.doi.org/10.1101/221564

Cao P; Klonis N; Zaloumis S; Khoury DS; Cromer D; Davenport MP; Tilley L; Simpson JA; McCaw JM, 2017, A mechanistic model quantifies artemisinin-induced parasite growth retardation in blood-stage Plasmodium falciparum infection, http://dx.doi.org/10.48550/arxiv.1701.05302