Dr Rowena Bull

Events

Dec 11

Dr Frank Maldarelli – Role of Viral Integration and Clonal Expansion in HIV Persistence: Live Long and Prosper

Dec 04

Kirby Institute World AIDS Day Special Seminar

Nov 27

Dr Scott Hadland – Youth and the Opioid-Related Overdose Crisis in the United States

Publications

Book Chapters

Bull RA; Luciani F, 2016, 'Next-Generation Sequencing, What Has It Told Us So Far?', in Foodborne Viral Pathogens, CRC Press

Bull R; White PA, 2010, 'Genome Organization and Recombination', in Hansman GS; Jiang XJ; Green KY (ed.), CALICIVIRUSES: MOLECULAR AND CELLULAR VIROLOGY, CAISTER ACADEMIC PRESS, pp. 45 - 63, http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=LinksAMR&KeyUT=WOS:000279759600003&DestLinkType=FullRecord&DestApp=ALL_WOS&UsrCustomerID=891bb5ab6ba270e68a

Mciver CJ; Bull RA; Tu ET; Rawlinson WD; White PA, 2005, 'Norovirus and Sapovirus', in McIver CJ (ed.), A Compendium of Laboratory Diagnostic Methods for Common and Unusual Enteric Pathogens - an Australian Perspective, edn. 1, Australian Society of Microbiology, Australia, pp. 191 - 198

Journal articles

Eyre NS; Johnson SM; Eltahla AA; Aloi M; Aloia AL; McDevitt CA; Bull RA; Beard MR, 2017, 'Genome-wide mutagenesis of dengue virus reveals plasticity of the NS1 protein and enables generation of infectious tagged reporter viruses', Journal of Virology, vol. 91, http://dx.doi.org/10.1128/JVI.01455-17

Rizzetto S; Eltahla AA; Lin P; Bull R; Lloyd AR; Ho JWK; Venturi V; Luciani F, 2017, 'Impact of sequencing depth and read length on single cell RNA sequencing data of T cells', Scientific Reports, vol. 7, http://dx.doi.org/10.1038/s41598-017-12989-x

Eden J-S; Chisholm RH; Bull RA; White PA; Holmes EC; Tanaka MM, 2017, 'Persistent infections in immunocompromised hosts are rarely sources of new pathogen variants.', Virus Evol, vol. 3, pp. vex018, http://dx.doi.org/10.1093/ve/vex018

Bartlett SR; Wertheim JO; Bull RA; Matthews GV; Lamoury FMJ; Scheffler K; Hellard M; Maher L; Dore GJ; Lloyd AR, 2017, 'A molecular transmission network of recent hepatitis C infection in people with and without HIV: Implications for targeted treatment strategies', Journal of Viral Hepatitis, vol. 24, pp. 404 - 411, http://dx.doi.org/10.1111/jvh.12652

Eltahla AA; Leung P; Pirozyan MR; Rodrigo C; Grebely J; Applegate T; Maher L; Luciani F; Lloyd AR; Bull RA, 2017, 'Dynamic evolution of hepatitis C virus resistance-associated substitutions in the absence of antiviral treatment', Scientific Reports, vol. 7, http://dx.doi.org/10.1038/srep41719

Rodrigo C; Walker MR; Leung P; Eltahla AA; Grebely J; Dore GJ; Applegate T; Page K; Dwivedi S; Bruneau J, 2017, 'Limited naturally occurring escape in broadly neutralizing antibody epitopes in hepatitis C glycoprotein E2 and constrained sequence usage in acute infection', Infection, Genetics and Evolution, vol. 49, pp. 88 - 96, http://dx.doi.org/10.1016/j.meegid.2017.01.006

Leung P; Eltahla AA; Lloyd AR; Bull RA; Luciani F, 2017, 'Understanding the complex evolution of rapidly mutating viruses with deep sequencing: Beyond the analysis of viral diversity', Virus Research, vol. 239, pp. 43 - 54, http://dx.doi.org/10.1016/j.virusres.2016.10.014

Eltahla AA; Rodrigo C; Betz-Stablein B; Grebely J; Applegate T; Luciani F; Schinkel J; Dore GJ; Page K; Bruneau J, 2017, 'Analysis of resistance-associated substitutions in acute hepatitis C virus infection by deep sequencing across six genotypes and three continents', Journal of Viral Hepatitis, vol. 24, pp. 37 - 42, http://dx.doi.org/10.1111/jvh.12615

Rodrigo C; Eltahla AA; Bull RA; Luciani F; Grebely J; Dore GJ; Applegate T; Page K; Bruneau J; Morris MD, 2017, 'Phylogenetic analysis of full-length, early infection, hepatitis C virus genomes among people with intravenous drug use: the InC³ Study', Journal of Viral Hepatitis, vol. 24, pp. 43 - 52, http://dx.doi.org/10.1111/jvh.12616

Keoshkerian E; Hunter M; Cameron B; Nguyen N; Sugden P; Bull R; Zekry A; Maher L; Seddiki N; Zaunders J, 2016, 'Hepatitis C-specific effector and regulatory CD4 T-cell responses are associated with the outcomes of primary infection', Journal of Viral Hepatitis, vol. 23, pp. 985 - 993, http://dx.doi.org/10.1111/jvh.12576

Rodrigo C; Eltahla AA; Bull RA; Grebely J; Dore GJ; Applegate T; Page K; Bruneau J; Morris MD; Cox AL, 2016, 'Historical Trends in the Hepatitis C Virus Epidemics in North America and Australia', Journal of Infectious Diseases, vol. 214, pp. 1383 - 1389, http://dx.doi.org/10.1093/infdis/jiw389

Walker MR; Li H; Teutsch S; Betz-Stablein B; Luciani F; Lloyd AR; Bull RA, 2016, 'Incident hepatitis c virus genotype distribution and multiple infection in australian prisons', Journal of Clinical Microbiology, vol. 54, pp. 1855 - 1861, http://dx.doi.org/10.1128/JCM.00287-16

Bull RA; Eltahla AA; Rodrigo C; Koekkoek SM; Walker M; Pirozyan MR; Betz-Stablein B; Toepfer A; Laird M; Oh S, 2016, 'A method for near full-length amplification and sequencing for six hepatitis C virus genotypes', BMC Genomics, vol. 17, http://dx.doi.org/10.1186/s12864-016-2575-8

Eltahla AA; Rizzetto S; Pirozyan MR; Betz-Stablein BD; Venturi V; Kedzierska K; Lloyd AR; Bull RA; Luciani F, 2016, 'Linking the T cell receptor to the single cell transcriptome in antigen-specific human T cells', Immunology and Cell Biology, vol. 94, pp. 604 - 611, http://dx.doi.org/10.1038/icb.2016.16

Bartlett SR; Jacka B; Bull RA; Luciani F; Matthews GV; Lamoury FMJ; Hellard ME; Hajarizadeh B; Teutsch S; White B, 2016, 'HIV infection and hepatitis C virus genotype 1a are associated with phylogenetic clustering among people with recently acquired hepatitis C virus infection', Infection, Genetics and Evolution, vol. 37, pp. 252 - 258, http://dx.doi.org/10.1016/j.meegid.2015.11.028

Bretaña NA; Boelen L; Bull R; Teutsch S; White PA; Lloyd AR; Luciani F; Dolan K; Haber P; Rawlinson W, 2015, 'Transmission of hepatitis C virus among prisoners, Australia, 2005–2012', Emerging Infectious Diseases, vol. 21, pp. 765 - 774, http://dx.doi.org/10.3201/eid2105.141832

Narayana SK; Helbig KJ; McCartney EM; Eyre NS; Bull RA; Eltahla A; Lloyd AR; Beard MR, 2015, 'The interferon-induced transmembrane proteins, IFITM1, IFITM2, and IFITM3 inhibit hepatitis C virus entry', Journal of Biological Chemistry, vol. 290, pp. 25946 - 25959, http://dx.doi.org/10.1074/jbc.M115.657346

Eltahla AA; Luciani F; White PA; Lloyd AR; Bull RA, 2015, 'Inhibitors of the hepatitis C virus polymerase; mode of action and resistance', Viruses, vol. 7, pp. 5206 - 5224, http://dx.doi.org/10.3390/v7102868

Lamoury FMJ; Jacka B; Bartlett S; Bull RA; Wong A; Amin J; Schinkel J; Poon AF; Matthews GV; Grebely J, 2015, 'The influence of hepatitis C virus genetic region on phylogenetic clustering analysis', PLoS ONE, vol. 10, http://dx.doi.org/10.1371/journal.pone.0131437

Bull RA; Leung P; Gaudieri S; Deshpande P; Cameron B; Walker M; Chopra A; Lloyd AR; Luciani F; Dolan K, 2015, 'Transmitted/founder viruses rapidly escape from CD8<sup>+</sup> T cell responses in acute hepatitis C virus infection', Journal of Virology, vol. 89, pp. 5478 - 5490, http://dx.doi.org/10.1128/JVI.03717-14

Mina MM; Luciani F; Cameron B; Bull RA; Beard MR; Booth D; Lloyd AR, 2015, 'Resistance to hepatitis C virus: Potential genetic and immunological determinants', The Lancet Infectious Diseases, vol. 15, pp. 451 - 460, http://dx.doi.org/10.1016/S1473-3099(14)70965-X

Leung P; Bull R; Lloyd A; Luciani F, 2014, 'A bioinformatics pipeline for the analyses of viral escape dynamics and host immune responses during an infection', BioMed Research International, vol. 2014, http://dx.doi.org/10.1155/2014/264519

Hartfield M; Bull R; White PA; Lloyd A; Luciani F; Alizon S, 2014, 'Evidence that hepatitis C virus genome partly controls infection outcome', Evolutionary Applications, vol. 7, pp. 533 - 547, http://dx.doi.org/10.1111/eva.12151

Töpfer A; Marschall T; Bull RA; Luciani F; Schönhuth A; Beerenwinkel N, 2014, 'Viral Quasispecies Assembly via Maximal Clique Enumeration', PLoS Computational Biology, vol. 10, http://dx.doi.org/10.1371/journal.pcbi.1003515

Wong KKY; Rockman S; Ong C; Bull R; Stelzer-Braid S; Rawlinson W, 2013, 'Comparison of influenza virus replication fidelity in vitro using selection pressure with monoclonal antibodies', Journal of Medical Virology, vol. 85, pp. 1090 - 1094, http://dx.doi.org/10.1002/jmv.23532

Sugden PB; Ratnarajah S; Cameron B; Bull R; Lloyd AR; Pham TNQ; Michalak TI; White PA, 2013, 'Rare occurrence of occult hepatitis C virus in apparently uninfected injecting drug users: A two-centre, masked, case-control study', Journal of Viral Hepatitis, http://dx.doi.org/10.1111/jvh.12098

Sugden PB; Cameron B; Bull R; White PA; Lloyd AR, 2012, 'Occult infection with hepatitis C virus: Friend or foe', Immunology and Cell Biology, vol. 90, pp. 763 - 773, http://dx.doi.org/10.1038/icb.2012.20

Bull RA; Eden JS; Luciani F; McElroy K; Rawlinson WD; White PA, 2012, 'Contribution of intra- and interhost dynamics to norovirus evolution', Journal of Virology, vol. 86, pp. 3219 - 3229, http://dx.doi.org/10.1128/JVI.06712-11

Grebely J; Pham ST; Matthews GV; Petoumenos K; Bull RA; Yeung B; Rawlinson W; Kaldor J; Lloyd A; Hellard M, 2012, 'Hepatitis C virus reinfection and superinfection among treated and untreated participants with recent infection', Hepatology, vol. 55, pp. 1058 - 1069, http://dx.doi.org/10.1002/hep.24754

Gouklani H; Bull RA; Beyer C; Coulibaly F; Gowans EJ; Drummer HE; Netter HJ; White PA; Haqshenas G, 2012, 'Hepatitis C virus nonstructural protein 5B is involved in virus morphogenesis', Journal of Virology, vol. 86, pp. 5080 - 5088, http://dx.doi.org/10.1128/JVI.07089-11

Luciani F; Bull RA; Lloyd AR, 2012, 'Next generation deep sequencing and vaccine design: Today and tomorrow', Trends in Biotechnology, vol. 30, pp. 443 - 452, http://dx.doi.org/10.1016/j.tibtech.2012.05.005

Bull RA; Hyde J; MacKenzie JM; Hansman GS; Oka T; Takeda N; White PA, 2011, 'Comparison of the replication properties of murine and human calicivirus RNA-dependent RNA polymerases', Virus Genes, vol. 42, pp. 16 - 27, http://dx.doi.org/10.1007/s11262-010-0535-y

Bull RA; White PA, 2011, 'Mechanisms of GII.4 norovirus evolution', Trends in Microbiology, vol. 19, pp. 233 - 240, http://dx.doi.org/10.1016/j.tim.2011.01.002

Bull RA; Luciani F; McElroy K; Gaudieri S; Pham ST; Chopra A; Cameron B; Maher L; Dore GJ; White PA, 2011, 'Sequential bottlenecks drive viral evolution in early acute hepatitis c virus infection', PLoS Pathogens, vol. 7, http://dx.doi.org/10.1371/journal.ppat.1002243

Wong KKY; Bull RA; Stelzer-Braid S; Fennell M; Rawlinson W, 2011, 'Effect of reassortment on the nucleotide and amino acid changes of human A/H3N2 RNP subunits during 1998-2009', Journal of Clinical Virology, vol. 51, pp. 266 - 271, http://dx.doi.org/10.1016/j.jcv.2011.05.013

Byun R; Sheppeard V; Bull R, 2010, 'Bug breakfast in the Bulletin: Gastroenteritis outbreaks in institutions.', New South Wales public health bulletin, vol. 21, pp. 267 - 268

Bull RA; Eden JS; Rawlinson WD; White PA, 2010, 'Rapid evolution of pandemic noroviruses of the GII.4 lineage', PLoS Pathogens, vol. 6, http://dx.doi.org/10.1371/journal.ppat.1000831

Eden JS; Bull RA; Tu E; McIver CJ; Lyon MJ; Marshall JA; Smith DW; Musto J; Rawlinson WD; White PA, 2010, 'Norovirus GII.4 variant 2006b caused epidemics of acute gastroenteritis in Australia during 2007 and 2008', Journal of Clinical Virology, vol. 49, pp. 265 - 271, http://dx.doi.org/10.1016/j.jcv.2010.09.001

Pham ST; Bull RA; Bennett JM; Rawlinson WD; Dore GJ; Lloyd AR; White PA, 2010, 'Frequent multiple hepatitis C virus infections among injection drug users in a prison setting', Hepatology, vol. 52, pp. 1564 - 1572, http://dx.doi.org/10.1002/hep.23885

Tu ETV; Bull RA; Greening GE; Hewitt J; Lyon MJ; Marshall JA; McIver CJ; Rawlinson WD; White PA, 2008, 'Epidemics of gastroenteritis during 2006 were associated with the spread of norovirus GII.4 variants 2006a and 2006b', Clinical Infectious Diseases, vol. 46, pp. 413 - 420, http://dx.doi.org/10.1086/525259

Tu ETV; Bull RA; Kim MJ; McIver CJ; Heron L; Rawlinson WD; White PA, 2008, 'Norovirus excretion in an aged-care setting', Journal of Clinical Microbiology, vol. 46, pp. 2119 - 2121, http://dx.doi.org/10.1128/JCM.02198-07

Tu ETV; Nguyen T; Lee P; Bull RA; Musto J; Hansman G; White PA; Rawlinson WD; McIver CJ, 2007, 'Norovirus GII.4 strains and outbreaks, Australia [10]', Emerging Infectious Diseases, vol. 13, pp. 1128 - 1130, http://dx.doi.org/10.3201/eid1307.060999

Bull RA; Tanaka MM; White PA, 2007, 'Norovirus recombination', Journal of General Virology, vol. 88, pp. 3347 - 3359, http://dx.doi.org/10.1099/vir.0.83321-0

Bull RA; Tu ETV; McIver CJ; Rawlinson WD; White PA, 2006, 'Emergence of a new norovirus genotype II.4 variant associated with global outbreaks of gastroenteritis', Journal of Clinical Microbiology, vol. 44, pp. 327 - 333, http://dx.doi.org/10.1128/JCM.44.2.327-333.2006

Bull RA; Hansman GS; Clancy LE; Tanaka MM; Rawlinson WD; White PA, 2005, 'Norovirus recombination in ORF1/ORF2 overlap', Emerging Infectious Diseases, vol. 11, pp. 1079 - 1085, http://dx.doi.org/10.3201/eid1107.041273

Conference Papers

Leung P; Bull R; Lloyd A; Luciani F, 2016, 'Co-evolving mutations in hepatitis C virus in the context of immune escape against neutralising antibody responses - A bioinformatic workflow for the analysis of co-evolving mutations in viral genomes', in International Workshop on Artificial Immune Systems, AIS 2015/ICSI3 2015 - Systems Immunology, Immunoinformatics and Immune-computation: Immunology without Borders, Proceedings, http://dx.doi.org/10.1109/AISW.2015.7469236

Töpfer A; Marschall T; Bull RA; Luciani F; Schönhuth A; Beerenwinkel N, 2014, 'Viral quasispecies assembly via maximal clique enumeration', in Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), pp. 309 - 310, http://dx.doi.org/10.1007/978-3-319-05269-4_25

Boelen L; Bull RA; Teutsch S; Lloyd AR; Luciani F, 2013, 'MOLECULAR EPIDEMIOLOGY AND SOCIAL NETWORK ANALYSIS TO TRACK HCV TRANSMISSION IN HIGH-RISK COMMUNITIES: INJECTING DRUG USERS IN PRISONS OF NEW SOUTH WALES, AUSTRALIA', in JOURNAL OF HEPATOLOGY, ELSEVIER SCIENCE BV, Amsterdam, NETHERLANDS, pp. S193 - S193, presented at International Liver Congress / 48th Annual Meeting of the European-Association-for-the-Study-of-the-Liver (EASL), Amsterdam, NETHERLANDS, 24 - 28 April 2013, http://dx.doi.org/10.1016/S0168-8278(13)60473-0

Luciani F; Bull RA; Cameron B; Gaudieri S; Nguyen N; Yuen D; White PA; Purcell DFJ; Foung S; Lloyd AR, 2012, 'IMMUNE RESPONSES AGAINST FOUNDER HEPATITIS C VIRUSES IN ACUTE ASYMPTOMATIC SUBJECTS', in JOURNAL OF HEPATOLOGY, ELSEVIER SCIENCE BV, Barcelona, SPAIN, pp. S312 - S312, presented at 47th Annual Meeting of the European-Association-for-the-Study-of-the-Liver (EASL), Barcelona, SPAIN, 18 - 22 April 2012, http://dx.doi.org/10.1016/S0168-8278(12)60809-5

Luciani F; Bull R; Mcelroy K; Pham S; Cameron B; Chopra A; Gaudieri S; Cooper D; Lloyd A; White P, 2011, 'EVOLUTIONARY DYNAMICS OF HEPATITIS C VIRUS DURING VERY EARLY INFECTIONS: VIROLOGICAL AND IMMUNOLOGICAL INSIGHTS', in JOURNAL OF HEPATOLOGY, ELSEVIER SCIENCE BV, Berlin, GERMANY, pp. S18 - S18, presented at 46th Annual Meeting of the European-Association-for-the-Study-of-the-Liver (EASL), Berlin, GERMANY, 01 January 2011, http://dx.doi.org/10.1016/S0168-8278(11)60040-8

Theses / Dissertations

Bull RA, 2008, Mechanisms of replication and genomic diversity in Human Caliciviruses

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