Journal articles
Cunningham EB; Hajarizadeh B; Bretana NA; Amin J; Betz-Stablein B; Dore GJ; Luciani F; Teutsch S; Dolan K; Lloyd AR, 2017, 'Ongoing incident hepatitis C virus infection among people with a history of injecting drug use in an Australian prison setting, 2005-2014: The HITS-p study', Journal of Viral Hepatitis, vol. 24, pp. 733 - 741, http://dx.doi.org/10.1111/jvh.12701
Bretaña NA; Boelen L; Bull R; Teutsch S; White PA; Lloyd AR; Luciani F; Dolan K; Haber P; Rawlinson W, 2015, 'Transmission of hepatitis C virus among prisoners, Australia, 2005–2012', Emerging Infectious Diseases, vol. 21, pp. 765 - 774, http://dx.doi.org/10.3201/eid2105.141832
Nguyen VN; Huang KY; Huang CH; Chang TH; Bretaña NA; Lai KR; Weng JTY; Lee TY, 2015, 'Characterization and identification of ubiquitin conjugation sites with E3 ligase recognition specificities', BMC Bioinformatics, vol. 16, http://dx.doi.org/10.1186/1471-2105-16-S1-S1
Kao HJ; Huang CH; Bretaña NA; Lu CT; Huang KY; Weng SL; Lee TY, 2015, 'A two-layered machine learning method to identify protein O-GlcNAcylation sites with O-GlcNAc transferase substrate motifs', BMC Bioinformatics, vol. 16, http://dx.doi.org/10.1186/1471-2105-16-S18-S10
Luciani F; Bretaña NAR; Teutsch S; Amin J; Topp L; Dore GJ; Maher L; Dolan K; Lloyd AR, 2014, 'A prospective study of hepatitis C incidence in Australian prisoners', Addiction (Abingdon, England), vol. 109, pp. 1695 - 1706, http://dx.doi.org/10.1111/add.12643
Huang KY; Lu CT; Bretaña NA; Lee TY; Chang TH, 2013, 'ViralPhos: Incorporating a recursively statistical method to predict phosphorylation sites on virus proteins', BMC Bioinformatics, vol. 14, http://dx.doi.org/10.1186/1471-2105-14-S16-S10
Lu CT; Huang KY; Su MG; Lee TY; Bretaña NA; Chang WC; Chen YJ; Chen YJ; Huang HD, 2013, 'DbPTM 3.0: An informative resource for investigating substrate site specificity and functional association of protein post-translational modifications', Nucleic Acids Research, vol. 41, http://dx.doi.org/10.1093/nar/gks1229
Bretaña NA; Lu CT; Chiang CY; Su MG; Huang KY; Lee TY; Weng SL, 2012, 'Identifying protein phosphorylation sites with kinase substrate specificity on human viruses', PLoS ONE, vol. 7, http://dx.doi.org/10.1371/journal.pone.0040694
Lee TY; Bretaña NA; Lu CT, 2011, 'PlantPhos: Using maximal dependence decomposition to identify plant phosphorylation sites with substrate site specificity', BMC Bioinformatics, vol. 12, http://dx.doi.org/10.1186/1471-2105-12-261
Lee TY; Lin ZQ; Hsieh SJ; Bretaña NA; Lu CT, 2011, 'Exploiting maximal dependence decomposition to identify conserved motifs from a group of aligned signal sequences', Bioinformatics, vol. 27, pp. 1780 - 1787, http://dx.doi.org/10.1093/bioinformatics/btr291
Lu CT; Chen SA; Bretaña NA; Cheng TH; Lee TY, 2011, 'Carboxylator: Incorporating solvent-accessible surface area for identifying protein carboxylation sites', Journal of Computer-Aided Molecular Design, vol. 25, pp. 987 - 995, http://dx.doi.org/10.1007/s10822-011-9477-2
HsuJustin JBK; Bretaña NA; Lee TY; Huang HD, 2011, 'Incorporating evolutionary information and functional domains for identifying RNA splicing factors in humans', PLoS ONE, vol. 6, http://dx.doi.org/10.1371/journal.pone.0027567
Lee TY; Lu CT; Chen SA; Bretaña NA; Cheng TH; Su MG; Huang KY, 2011, 'Investigation and identification of protein γ-glutamyl carboxylation sites', BMC Bioinformatics, vol. 12, http://dx.doi.org/10.1186/1471-2105-12-S13-S10
Lee TY; Lu CT; Chen SA; Bretaña NA; Cheng TH; Su MG; Huang KY, 2011, 'Investigation and identification of protein g-glutamyl carboxylation sites', 10th International Conference on Bioinformatics - 1st ISCB Asia Joint Conference 2011, InCoB 2011/ISCB-Asia 2011: Bioinformatics - Proceedings from Asia Pacific Bioinformatics Network (APBioNet), vol. 12
Hsu JBK; Bretaña NA; Lee TY; Huang HD, 2011, 'Incorporating evolutionary information and functional domains for identifying RNA splicing factors in humans.', PloS one, vol. 6
